RNA id: TU197744


Basic Information

Item Value
RNA id TU197744
length 518
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G157010
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 20228586 ~ 20229103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGtaagtagatagtagggttttttgggcgcggcctattttgttatgacgtatgccctaagcttattaatattcctacgtcataattggggggcgtgattttatgtagatttatttccttaattattcctacgtcatatccgtcagaaagtgtacacccataaaaccctgaacaacaaggccgCCCATAAAGACCCCCACCCCTCTGAAGGCAACGCCCCGAAACTCTCCTCTCTATTTAAGAACCCGCGCTGCTTTTAGGCAATACCTCTTTAATTCTCAGCATCTGAAACATCCCGCTTCTTCAACATGTCCAGCGACATCAACATGAAACCCCGCAAGAAACAATCCCGGGCAAGGGTTCCTGTACTCACCAATTTGAAGATTGAACGCTCCTGGGTGTTGTTCTGGGGAAGTCGACGGGGTTACCGCTTTAAAAGGGATCCCAGCTATGTTGGAGTGGAACTTTATGCtttgggagagaaggagggtaCGTTGGAACCTTTTGAGACGGTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197743 lncRNA upstream 4973 20223334 ~ 20223613 (+) True G157009
TU197637 lncRNA upstream 827182 19401014 ~ 19401404 (+) True G156933
TU197634 lncRNA upstream 833558 19394816 ~ 19395028 (+) True G156930
TU197632 lncRNA upstream 838366 19389963 ~ 19390220 (+) True G156928
TU197558 lncRNA upstream 986742 19238192 ~ 19241844 (+) True G156868
TU197748 lncRNA downstream 58528 20287631 ~ 20287969 (+) True G157014
TU197768 lncRNA downstream 179415 20408518 ~ 20408775 (+) True G157034
TU197793 lncRNA downstream 394970 20624073 ~ 20696664 (+) True G157056
TU197797 lncRNA downstream 394970 20624073 ~ 20696664 (+) False G157056
TU197795 lncRNA downstream 467181 20696284 ~ 20744205 (+) False G157056
AMCG00006198 mRNA upstream 449141 19778653 ~ 19779445 (+) True AMCG00006198
AMCG00006179 mRNA upstream 526288 19700763 ~ 19702298 (+) True AMCG00006179
AMCG00006180 mRNA upstream 546820 19648606 ~ 19681766 (+) True AMCG00006180
AMCG00006182 mRNA upstream 617421 19600813 ~ 19611165 (+) True AMCG00006182
AMCG00006181 mRNA upstream 688900 19523739 ~ 19539686 (+) True AMCG00006181
TU197362 other upstream 1748499 18478128 ~ 18480087 (+) True AMCG00006174
TU197332 other upstream 1871997 18190224 ~ 18356589 (+) True AMCG00006138
TU197282 other upstream 2247949 17973741 ~ 17980637 (+) False G156640
TU197026 other upstream 3101032 17123205 ~ 17127554 (+) False AMCG00006149
TU196902 other upstream 3599404 16627793 ~ 16629182 (+) True G156327

Expression Profile