RNA id: TU197772


Basic Information

Item Value
RNA id TU197772
length 311
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G157038
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 20418974 ~ 20419284 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcttactaactggtattgtagtcaatgtgtttataaccttttttgtttaacgatttgtgtgttatcatatgcgatcccatggtctttgatttggtcacggaagtgatttgtctttgatttgttgatctagagttgaattttaattagtttttcccttttgtataattagtgtagtgctacatttagtctttgtttttgaataaatttgacaatttgtatctttggaattggtgtctgcgtccaattattacagaaattgagttctacaagattccaggattcgtgataaggtgatactataaattcacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197764 lncRNA downstream 52144 20366589 ~ 20366830 (-) True G157030
TU197754 lncRNA downstream 64306 20354463 ~ 20354668 (-) True G157020
TU197745 lncRNA downstream 189871 20228586 ~ 20229103 (-) True G157011
TU197693 lncRNA downstream 613803 19804948 ~ 19805171 (-) True G156979
TU197685 lncRNA downstream 701295 19717173 ~ 19717679 (-) True G156971
TU197776 lncRNA upstream 31188 20450472 ~ 20486674 (-) True G157042
TU197791 lncRNA upstream 156159 20575443 ~ 20588795 (-) True G157055
TU197792 lncRNA upstream 156159 20575443 ~ 20588795 (-) False G157055
TU197803 lncRNA upstream 204789 20624073 ~ 20744100 (-) True G157057
TU197801 lncRNA upstream 276996 20696280 ~ 20744100 (-) False G157057
AMCG00006193 mRNA downstream 430563 19984679 ~ 19988411 (-) True AMCG00006193
AMCG00006194 mRNA downstream 496503 19895425 ~ 19922471 (-) True AMCG00006194
AMCG00006197 mRNA downstream 537057 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006196 mRNA downstream 544043 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006195 mRNA downstream 559605 19824825 ~ 19859369 (-) True AMCG00006195
TU197648 other downstream 967113 19448931 ~ 19451861 (-) False AMCG00006201
TU197609 other downstream 1125154 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 3468857 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 3747587 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 3900863 16505593 ~ 16518111 (-) False AMCG00006118
TU197805 other upstream 290515 20709799 ~ 20712216 (-) True G157059

Expression Profile