RNA id: TU197776


Basic Information

Item Value
RNA id TU197776
length 285
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G157042
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 20450472 ~ 20486674 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacagccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcctgcagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaatctgtggttcgagttgccaaacatcagcctcgaaaccttaatgacttggagaggatctacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaatgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagttgaaggggtcaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197772 lncRNA downstream 31188 20418974 ~ 20419284 (-) True G157038
TU197764 lncRNA downstream 83642 20366589 ~ 20366830 (-) True G157030
TU197754 lncRNA downstream 95804 20354463 ~ 20354668 (-) True G157020
TU197745 lncRNA downstream 221369 20228586 ~ 20229103 (-) True G157011
TU197693 lncRNA downstream 645301 19804948 ~ 19805171 (-) True G156979
TU197791 lncRNA upstream 88769 20575443 ~ 20588795 (-) True G157055
TU197792 lncRNA upstream 88769 20575443 ~ 20588795 (-) False G157055
TU197803 lncRNA upstream 137399 20624073 ~ 20744100 (-) True G157057
TU197801 lncRNA upstream 209606 20696280 ~ 20744100 (-) False G157057
TU197809 lncRNA upstream 257572 20744246 ~ 20744954 (-) True G157063
AMCG00006193 mRNA downstream 462061 19984679 ~ 19988411 (-) True AMCG00006193
AMCG00006194 mRNA downstream 528001 19895425 ~ 19922471 (-) True AMCG00006194
AMCG00006197 mRNA downstream 568555 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006196 mRNA downstream 575541 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006195 mRNA downstream 591103 19824825 ~ 19859369 (-) True AMCG00006195
TU197648 other downstream 998611 19448931 ~ 19451861 (-) False AMCG00006201
TU197609 other downstream 1156652 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 3500355 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 3779085 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 3932361 16505593 ~ 16518111 (-) False AMCG00006118
TU197805 other upstream 223125 20709799 ~ 20712216 (-) True G157059

Expression Profile