RNA id: TU197791


Basic Information

Item Value
RNA id TU197791
length 351
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G157055
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 20575443 ~ 20588795 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCTGTCAATagggccaagagcgaggtctacctctccagagcatggcctgtcggccggggcccgccgactgtgttccctgtgaagccatccatcaaggttctggggatcacgatcgacgggaccaacacgggcacccggagctgggaggaggccTTATCCAAGGTCCAaaggaagatccacggctggagcacaaggaccttgacgatggctggtaaggtgctggtcgtaaaggccatcctcttcccgatactcCTCTATGTAGGaatgatcttccccccagacaaggtcGTCGCAAAATTAGtgaccagaattatatttaggtttgtctgggggagcaaaatggagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197776 lncRNA downstream 88769 20450472 ~ 20486674 (-) True G157042
TU197772 lncRNA downstream 156159 20418974 ~ 20419284 (-) True G157038
TU197764 lncRNA downstream 208613 20366589 ~ 20366830 (-) True G157030
TU197754 lncRNA downstream 220775 20354463 ~ 20354668 (-) True G157020
TU197745 lncRNA downstream 346340 20228586 ~ 20229103 (-) True G157011
TU197803 lncRNA upstream 35278 20624073 ~ 20744100 (-) True G157057
TU197801 lncRNA upstream 107485 20696280 ~ 20744100 (-) False G157057
TU197809 lncRNA upstream 155451 20744246 ~ 20744954 (-) True G157063
TU197859 lncRNA upstream 459021 21047816 ~ 21048023 (-) True G157104
TU197860 lncRNA upstream 459419 21048214 ~ 21048621 (-) True G157105
AMCG00006193 mRNA downstream 587032 19984679 ~ 19988411 (-) True AMCG00006193
AMCG00006194 mRNA downstream 652972 19895425 ~ 19922471 (-) True AMCG00006194
AMCG00006197 mRNA downstream 693526 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006196 mRNA downstream 700512 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006195 mRNA downstream 716074 19824825 ~ 19859369 (-) True AMCG00006195
TU197648 other downstream 1123582 19448931 ~ 19451861 (-) False AMCG00006201
TU197609 other downstream 1281623 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 3625326 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 3904056 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 4057332 16505593 ~ 16518111 (-) False AMCG00006118
TU197805 other upstream 121004 20709799 ~ 20712216 (-) True G157059

Expression Profile