RNA id: TU197805


Basic Information

Item Value
RNA id TU197805
length 330
RNA type TUCP
GC content 0.44
exon number 3
gene id G157059
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 20709799 ~ 20712216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggttattgtgtcagttcactctcctccatgtctgtctgtgtttctgatgcacatttctacATGCATCCAGCACGTACTGTACCTGAGTTCCACTGGAGGGTCTGACCTGGGAGACACAGTGCGCAAAGTAATGTGTAAGATATTTACCAACAAGCTCATGTCCCACTACAGCATGGAGGGGAAAAATGGAAAGCTGAGGTCTGAAGATCTCTACAACAACAAAGTGATAATAaaagccGTCAAACGCAACAGCAAGGTGTCATCAGAAGTGGAGTTTAAAATAGGAGAGACTCTAAAACTGGCACCACATTGGGAGAAACAATATCAGG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197791 lncRNA downstream 121004 20575443 ~ 20588795 (-) True G157055
TU197792 lncRNA downstream 121004 20575443 ~ 20588795 (-) False G157055
TU197776 lncRNA downstream 223125 20450472 ~ 20486674 (-) True G157042
TU197772 lncRNA downstream 290515 20418974 ~ 20419284 (-) True G157038
TU197764 lncRNA downstream 342969 20366589 ~ 20366830 (-) True G157030
TU197809 lncRNA upstream 32030 20744246 ~ 20744954 (-) True G157063
TU197859 lncRNA upstream 335600 21047816 ~ 21048023 (-) True G157104
TU197860 lncRNA upstream 335998 21048214 ~ 21048621 (-) True G157105
AMCG00006193 mRNA downstream 721388 19984679 ~ 19988411 (-) True AMCG00006193
AMCG00006194 mRNA downstream 787328 19895425 ~ 19922471 (-) True AMCG00006194
AMCG00006197 mRNA downstream 827882 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006196 mRNA downstream 834868 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006195 mRNA downstream 850430 19824825 ~ 19859369 (-) True AMCG00006195
TU197648 other downstream 1257938 19448931 ~ 19451861 (-) False AMCG00006201
TU197609 other downstream 1415979 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 3759682 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 4038412 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 4191688 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile