RNA id: AMCG00006203


Basic Information

Item Value
RNA id AMCG00006203
length 2094
RNA type mRNA
GC content 0.54
exon number 13
gene id AMCG00006203
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10483 ~ 44127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCAAGAGGTCAGCACTGGGCCCTGGAGGGCAACACTAGGCCCTGGAGGGCAACACATGGCCCAAGAGGCCGGCGGTGAGGGCGGAGTGACCGATGGACAGATGGACACGCACACAGTCAGCCTCAGTCCTGATCTAGGAGCCATGAAGACGACCTGGTACTGTCCTCTGGAGCTGccTGCGGAGGTCAgtgagctggaggaggagggggtgctgTACAGCGTGGTGACCAGACAGCAGCACAGCGCCGCCACCTGTCCGGGGccctctctctctcactcccggTGTGTGAAGGGAGGCACAGTGGAGGGACTGGTGCTCCATCTGCTCAGCTGCTCGTCTCTGGGTGACTCGTCCTTCCTGCCCACCTTCCTGTCCACCTACCGCAGCTTCACCACACCTGAGACAGTGCTGAGCATCCTAACGCACAgCGACAGTGACCTCTCGATGAACTCACTCTCTGACCCCGTGACCTCTGACTTTGATGTGACAACTGTATTGGGCTTCCCTGCAGAGCTGATTGCTGAGCAGCTGACTATGATCGAAACGGAGCTGTTTGTGAAGGTGGTGCCATACCAGTGTCTGGGCTCCCTGTGGTCTCGCAGGGACAAGCAGCGGGGGGCGTGTCCGCTGTCGTGCAGGGAGGCGGTGCAGAGCTACGAAGAGCTGTGCCAGATCTTCTCTGAGAAAGACAACTACTCCCAGAGCAGGGAGCTGCTGAAGGAGGTGAGCAGCAGCGACCACAGCATGAGTACTgactcccctctctctgtcagcaTGCTGTGCTCCGTGGCCAGCCCAGGGTTCGAAGGAGATGGGTCAGGTGACTACCCCTCCCCTGTCAATCATCTTCTGATACGCCTAGCTAAGCACATGAAGTCTCCCTCAGTTTCCTGTCTGGATGTTGACTCCTCTCCTCCAGCGTcagacccccccacctccatgCTGGCCCCCCCTCCCAGCTTTGTGAAGTCACACCGACGCTCTGCCTCCTGTGGCACAACGTCCCCCCCCGTCGCAGCCAAGGGGGCCGGGCCCGACATCAGGATCGTGACTAGCAATGACAAGACCCCCAGTGTGGTCAGCACTGCACTGGAGAAACACAGCCAGGACCCCAGCCAGGCCCCTAAGCACGTGGCGAGGTGCGCACCCCCACTCGCACTCGAGGAAGCTCAACAGAGGGACGCAGCCGAGAGACGACAACGCCCCCTCCCACTCTAACTCACCATGCCAGCCACAGGAAATGTCTTCTATGCAATGACATCATCTAGTGTGGACTTCCTTTTGCGGAGGCGGGGCCAGGCTGCTCACACCAGCTTGTACCCAATCAACAGTGAGAATAGCGCCACATTCCCGCGCATCAAAGCCAAGGGCCGGAAATTTGTACGGGCGCTTTTCTGACATTACTTCCTCCTTGTGCCACAAGACATGATGCAACTTGTTTGACCTTTGAACTCTAGAGCTGCACTTCTGTCACTAGTGATATTGACACTGAAAGCCATCTGAGCCACTGCAGGGAGGTCTGGGctgtgctggactggactggtttGTACTGGCCCTGAATGGACTGGATTGGGTTGTACTGGTCTGGACTGACTATTATAAATTGAAACAGTCCTAAACTGACATTATAATCTGAATCCCGCTGACACTAACAGGTAAAATGTTctagactttcatttttatgaGATAGGGAGTGAAGGAAAGATGGAAAGTGACACTGGAGAGTTGTAGAACAGTCCAGTCCTTGAGATCTACAGGACAACAGCGGTCATGAGAGATGCAGAGATTAGGGAGAGATGTAGAGATATGAAAGTAATGCACAGggagagatgggagagagatgcagagatgTGCAGAGAGATCTGTACCTGATCTGCCCTGACTGAGACAGTCTCACACATAAAGCCTTTGACCTGACTGAGAGCCAGTCATACCGACCTATGACTTCTGACCTTCAGGCAGACAAAGACTTAAAACCTGAgctttattttcatactgtattATAGTTGTATATGTctgaatacacatttatatttcatacaaGCTGTTGTTAAGACAGTAATCAATAAAGCTAAATGATAAGCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135447 lncRNA upstream 41362 85489 ~ 225141 (-) False G108324
TU135481 lncRNA upstream 73010 117137 ~ 118399 (-) True G108349
TU135445 lncRNA upstream 84598 128725 ~ 225141 (-) False G108324
TU135452 lncRNA upstream 84598 128725 ~ 225141 (-) False G108324
TU135462 lncRNA upstream 96432 140559 ~ 175193 (-) True G108330
AMCG00006211 mRNA upstream 26192 70319 ~ 89489 (-) True AMCG00006211
AMCG00006212 mRNA upstream 55775 99902 ~ 108542 (-) True AMCG00006212
AMCG00006209 mRNA upstream 97945 142072 ~ 146398 (-) True AMCG00006209
AMCG00006210 mRNA upstream 103244 147371 ~ 150061 (-) True AMCG00006210
AMCG00006213 mRNA upstream 119475 163602 ~ 165518 (-) True AMCG00006213
TU135453 other upstream 177144 221271 ~ 225141 (-) True G108324
TU135530 other upstream 292609 336736 ~ 339948 (-) True G108379
TU135541 other upstream 351297 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 435455 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 687314 731441 ~ 735410 (-) False AMCG00006245

Expression Profile