RNA id: TU135311


Basic Information

Item Value
RNA id TU135311
length 1084
RNA type TUCP
GC content 0.66
exon number 4
gene id AMCG00006205
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 175725 ~ 181496 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacactgacacacactgacacactgatgcacactgacacacacagacacacacagacacactgacacacactgacgctgtgttgtgtgtattgtattaaccctctctccctctcagtgtgGGGGGCTCAGTGCCCTGTGCTGGAGTGCTGGTTCGTGCAGGAGAAGGCGGGGGCCCGCGGGGGCGGGTTCCCGGCGGCGATGACTCAGGAGAAGAGCCTGATGATCGTGAGCCGAGAGTCGGAGCAGCCAGCGCCCAACCACAGCGACGGTGTCCAGCCCAACCGAGTGTACCAGGTCACCGatGCGGGGGGCTCTCTGTGCAGGTCCTCTCTGCGCTCAGTCGAGGGCGCTGTGGAGAAGCCGCAGTGTGAGATTAACCCCTTCCTGCCCCAGCCTGCCCTCGTCCAATGGGCCGCCCCACTCACCAGCGTCGCTctaagccccgcccacctgcagGCCGATTGGCTGTCGGCCTCCTTGCAGGGGCTGGACGGGCGGCTGGTGCTGTCCAATGTGATGCGCGTTCCCACAGGAACCAACCAGGCCACAGtgtgttcagtcGCACTCCAGTGCTGCGCTCCCGGCTGGACGCCCCGGTGCTGCTAGACTGTGGGTTCTGGGCGTGGCCGGGCTGGCCGCTGGCCGGGTCGGGCTTCGCGGTGGAGTGGCGGTACCAGCACCGCGGGGAGGGCCGGCTCCTGCTGGCCTACGACGGGAAGGGCGACCGGTTGGACGAGAGCCGGGAGGAGCGGGCAGGGCTGGATGTAGAGGCCGTGCACCGCACAGGAAACGCATCACTGAGCCTGGAGCGGGCGGAAGTGAGGCATGCTGGGACATACATCTGCACCGTGTACCTGCCCTACATCCTGGCTCAGGTAGCCATGGAGCTGGAGATCATAGAGCCCCCCACGCTCACCCTGTCCCCCTCTCCGGTGTGGGCCGTGTCGGGGCAGTCGGTGTCGGTGCAATGTGAGGCGAGTGGCTTCTACCCGCTGGCCCTGGAGCTAGACTGGGAGTACCAGTCGGTGGGGGGCTCCTCCTCGCTGCCCCTGCCCGGGGGGGACGCGGCGCGGCTGTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135276 lncRNA upstream 1936 132006 ~ 175202 (+) False G108193
TU135275 lncRNA upstream 1936 155293 ~ 175202 (+) True G108193
TU135303 lncRNA upstream 10982 163478 ~ 166156 (+) True G108219
TU135253 lncRNA upstream 133225 17651 ~ 43913 (+) True G108182
TU135252 lncRNA upstream 155792 17651 ~ 21346 (+) False G108182
TU135327 lncRNA downstream 41869 221271 ~ 225353 (+) True AMCG00006218
TU135331 lncRNA downstream 84027 263429 ~ 264556 (+) True G108239
TU135341 lncRNA downstream 132152 311554 ~ 313413 (+) True G108248
TU135354 lncRNA downstream 194734 374136 ~ 392793 (+) True G108253
TU135359 lncRNA downstream 204995 384397 ~ 405340 (+) True G108256
AMCG00006206 mRNA upstream 14698 156082 ~ 162440 (+) True AMCG00006206
AMCG00006207 mRNA upstream 23414 153452 ~ 153724 (+) True AMCG00006207
AMCG00006208 mRNA upstream 36480 133988 ~ 140658 (+) True AMCG00006208
AMCG00006204 mRNA upstream 43521 122870 ~ 133617 (+) True AMCG00006204
AMCG00006202 mRNA upstream 123746 38723 ~ 53392 (+) True AMCG00006202
AMCG00006216 mRNA downstream 25735 205137 ~ 213351 (+) True AMCG00006216
AMCG00006218 mRNA downstream 39702 219104 ~ 223117 (+) False AMCG00006218
AMCG00006217 mRNA downstream 62585 241987 ~ 256465 (+) True AMCG00006217
AMCG00006215 mRNA downstream 87232 266634 ~ 271647 (+) True AMCG00006215
AMCG00006223 mRNA downstream 94790 274192 ~ 278089 (+) True AMCG00006223
TU135297 other upstream 39117 134067 ~ 138021 (+) False AMCG00006208
TU135365 other downstream 250361 429763 ~ 433905 (+) True AMCG00006231
TU135436 other downstream 595407 774809 ~ 791062 (+) False G108319
TU135437 other downstream 595407 774809 ~ 791062 (+) True G108319
TU135656 other downstream 667159 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 806471 985873 ~ 990822 (+) False AMCG00006256

Expression Profile