RNA id: TU135297


Basic Information

Item Value
RNA id TU135297
length 523
RNA type TUCP
GC content 0.69
exon number 3
gene id AMCG00006208
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 133988 ~ 140658 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCCACTCGCCTGGCGCCGCACAGCCTGCACTCCGCTCGGGCTGCCCGGGACACGCAGCCTTCCCTCGGGTGGGTGCCGCACGACCCCCGGATTCCCCCAGGCGGGCTCTGTCCGATACCATACCGGTGCCATGTCCGGCTGCAGCGCTGAGGGGGGCGTGTGGGAGGTGCAGGTGAGCTTCCCCTCGGTGCGGGGGGCGGTTCTGGCCGGTCTGAACCGGCAGCGTCTGGAGGGGCAGTTGTGTGACCTGGCCATCGAGGTGCAGGGCCAGGTGTTCCACGCACACCGCTGCGTGCTGGCAGCCTCCTCGCCATACTTCCACGACCAGGTGCTGCTGAAGAAGGTGTCCAGCGTGTGTCTGCCCTCAGTGCTGGACCCGGGGGCCGTGGAGAGCGTGCTGTCCAGCGTCTACACCGGCCGGCTGGCCATGCTGGGGGCGGACGTGCTGAGCTACCTGACGGTGGCCAGCGTGCTGCAGCTGTGGCACATCGTGGACAAGTGCACTGAGCTGCTGCGGGNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135253 lncRNA upstream 90154 17651 ~ 43913 (+) True G108182
TU135252 lncRNA upstream 112721 17651 ~ 21346 (+) False G108182
TU135275 lncRNA downstream 17272 155293 ~ 175202 (+) True G108193
TU135303 lncRNA downstream 25457 163478 ~ 166156 (+) True G108219
TU135327 lncRNA downstream 83250 221271 ~ 225353 (+) True AMCG00006218
TU135331 lncRNA downstream 125408 263429 ~ 264556 (+) True G108239
TU135341 lncRNA downstream 173533 311554 ~ 313413 (+) True G108248
AMCG00006204 mRNA upstream 450 122870 ~ 133617 (+) True AMCG00006204
AMCG00006202 mRNA upstream 80675 38723 ~ 53392 (+) True AMCG00006202
AMCG00006207 mRNA downstream 15431 153452 ~ 153724 (+) True AMCG00006207
AMCG00006206 mRNA downstream 18061 156082 ~ 162440 (+) True AMCG00006206
AMCG00006205 mRNA downstream 37704 175725 ~ 181496 (+) False AMCG00006205
AMCG00006216 mRNA downstream 67116 205137 ~ 213351 (+) True AMCG00006216
AMCG00006218 mRNA downstream 81083 219104 ~ 223117 (+) False AMCG00006218
TU135311 other downstream 39117 177138 ~ 179402 (+) True AMCG00006205
TU135365 other downstream 291742 429763 ~ 433905 (+) True AMCG00006231
TU135436 other downstream 636788 774809 ~ 791062 (+) False G108319
TU135437 other downstream 636788 774809 ~ 791062 (+) True G108319
TU135656 other downstream 708540 846561 ~ 848772 (+) False AMCG00006246

Expression Profile