RNA id: AMCG00006210


Basic Information

Item Value
RNA id AMCG00006210
length 1102
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00006210
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 147371 ~ 150061 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggagagagtgtcagtCTGAACCGCTGAGTTCCGGGCTGGGCAGGGGACTCCAGATCAATCGCTCTGATTGACCAGCGATCAGTTGGCACTTGGTTGGCGATCCGCTGGCAATGGTCACTAGGGGTCGGTCGAGGAGGTGACGAACAAGGGAGGAGAGaggtgatagagagagagagggagtgacggCTGACCAGACTAACTGGATGCTGCGCTGCTCCCTAAGTTAATGGAGGTCAAAGTTGAAAGTTTAGAGGTCATACAGTTTAACCTTTTAGTTACCAACAGCAATTTTGTACTGGAGGaggagcgagagggagagagggaggaggagagagagggagagagggaggatgaAAGGAAAACAGTTATTGTACAGACAAGGGATGAGGGAGAtgaagagacagacacagagggagagagggtgagagagacagaacGAGAGGAGGAAGCTGAGAAAGAGGCAGaaagggaagagaggagagagcgagaggcaGTGGGAGAAAgtgaggggcagagagaggaacAGGACACAAACACTGTGACAATTATTGTGAcagagatgaagagagagagggaaggagagggggaggagggccGAGATGGAGAGGTggacagaaaaacagagacacTGGAGGAGGACAAGAGAAAGGAGGAGACTGAAACAGACATAcagaagaagggagagagggatggagggatggaagGGAGGGAAGCAGAGGCAGGGTCACAGGATGACCTGGAAGTAAAGCCTACAGGAAGTGAAACAAACTACAGAGACAGACTGGAccccagagacacagagacacagGAGGGACGGCGCCTCAATGACCAGCGCTGCTCCTTCCGCCGCTCGCGACGGgggagtggggagggggggaggggctgCCACTCTGAGCCTGGCACCCCCCAGCCCCGCCATCGAGTGGTCTTCTCCTCGATGACGTCCCTGCAGAAAGAGGAGTTCTTTGACCTGGTCGCCACCTCCCAGGCCCGTCGGCTTGATGACCAGAGGGCGGAGCTTCATGATGCCCCACCCCTGGGGGGGGGGCGCATGGAGGAGCAGCGGACGGAGCTGCCCCTGgcgctgagagagagggactga

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135481 lncRNA downstream 28972 117137 ~ 118399 (-) True G108349
TU135461 lncRNA downstream 108022 33213 ~ 39349 (-) True G108329
TU135442 lncRNA downstream 126021 17554 ~ 21350 (-) True G108323
TU135451 lncRNA upstream 3171 153232 ~ 225141 (-) False G108324
TU135444 lncRNA upstream 11100 161161 ~ 225141 (-) False G108324
TU135443 lncRNA upstream 11466 161527 ~ 225141 (-) False G108324
TU135450 lncRNA upstream 11466 161527 ~ 225141 (-) False G108324
TU135502 lncRNA upstream 120695 270756 ~ 278261 (-) True G108365
AMCG00006209 mRNA downstream 973 142072 ~ 146398 (-) True AMCG00006209
AMCG00006212 mRNA downstream 38829 99902 ~ 108542 (-) True AMCG00006212
AMCG00006211 mRNA downstream 57882 70319 ~ 89489 (-) True AMCG00006211
AMCG00006203 mRNA downstream 103244 10483 ~ 44127 (-) True AMCG00006203
AMCG00006213 mRNA upstream 13541 163602 ~ 165518 (-) True AMCG00006213
AMCG00006214 mRNA upstream 15859 165920 ~ 172382 (-) True AMCG00006214
AMCG00006219 mRNA upstream 31323 181384 ~ 195349 (-) True AMCG00006219
AMCG00006220 mRNA upstream 86265 236326 ~ 242133 (-) True AMCG00006220
AMCG00006222 mRNA upstream 106276 256337 ~ 262432 (-) True AMCG00006222
TU135453 other upstream 71210 221271 ~ 225141 (-) True G108324
TU135530 other upstream 186675 336736 ~ 339948 (-) True G108379
TU135541 other upstream 245363 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 329521 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 581380 731441 ~ 735410 (-) False AMCG00006245

Expression Profile