RNA id: AMCG00006211


Basic Information

Item Value
RNA id AMCG00006211
length 2862
RNA type mRNA
GC content 0.63
exon number 15
gene id AMCG00006211
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 70319 ~ 89489 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTTTCTCAGCAGGAGGCTGAAGGGCTCTATTAAGAGGGCCAAGTCTCAGCCCAAGCTGGACCGAACCAGCAGCTTCCGCCACATGATCCTGCCCCGCTTCCGCAGTGCCGACCAGGaccgCACGGCGGCTGAGGCACTGGACCTCACGCTGGATGAGGACGCGCTCATCAAGCCTGTCCACTCCAGCATCCTGGGCCAGGAGTACTGCTTTGAGGTGACCACGGCGTCAGGGACGAAGTGCTTTGCGTGTCGCTCGGCGGCGGAGAGAGACAAGTGGATTGAAAACCTGCAGAGAGCAGTGAAACCCAacaaggATAACAGCCGGCGGGTGGACAATGTCTTGAAGCTGTGGATCATTGAGGCCAGAGACCTGCCGCCCAAGAAGCGCTACTACTGCGAGCTGTGCCTGGACGACATGCTGTACGCACGCACCACCAGCAAGCCGCGAACCGACACCGTGTTCTGGGGAGAGCACTTCGAGTTCAACAACCTGCCGGCTGTGCGCAACCTGCGGCTGCACCTGTACAAGGAGACGGACAAGAAGAGGCGCAAGgaGAAGAGCACGTACCTGGGGCTGGTCAGTATCCCTATCTCCAGTGTGACGGGGCGCCAGTTTGTGGAGCAGTGGTACCCGGTCATACAGCCCAGTGTGCTGGCCAAGGGCGgcggtgtgggggggggcaagGCTGTCAACGCCTCCCTGCGGCTCAAGTCGCGCTATCAGACTATGAGCATCCTGCCCATGGAGCTGTACAAGGAGTTTGCAGAGTTTGTCACCAACAACTACCGCGCGCTGTGCGGCGTGCTGGAGCCGGTGCTCAGTGTGCGCAGCAAGGAGGAGGTGGCCTGTGCGCTGGTTCACATCCTGCAGAGCACCGGCAAGGCCAAGGACTTCCTGTCAGACATGGCGATGTGTGAGGTTGACCGCTTTATCGACAGAGAGCACCTGATCTTCAGGGAGAACACACTGGCCAGCAAGGCCGTGGAGGAATACCTCAAGCTCATTGGACACAAGTACCTCAAGGATGCCATTGGAGAGTTTATCCGCGCTCTGTATGAGTCAGAAGAGAACTGTGAAGTTGACCCCATGAAGACTCCGCCCTCTGTGCTGGCTGACCACCAGGCCAACCTGCGCATGTGCTGCGAGCTGGCACTCTGCAAGATCGTGAACTCCCATTGCGTGTTCCCGCGGGAGCTTAAGGAGCTGTTTGCATCCTGGCGGGTGCGCTGTGCGGAGCGTGGCCGGGAGGACATTGCTGACCGCCTCATCTCTGCCTCGCTGTTCCTACGCTTCCTATGCCCAGCTGTGATGTCACCCAGCCTGTTCAGCCTGACGCAGGAGTACCCTGACGAGCAGACCTCCCGCACCCTCACCCTCATCGCAAAGGTCATCCAGAACCTCGCCAACTTCTCCAAGTTCGGCAGTAAGGAGGAGTATATGTGCTTCATGAATGAGTTCCTGGAGATGGAGTGGGGGTCCATGCAGCAGTTCCTCTACGAGATCTCCAACCTGGACAGCGTGACGAGCGCTGGGGGCTTCGAGGGCTACATCGACCTGGGCCGGGAGCTGtccacactgcactgcctgcTGTGGGAGGTCATGGGCCAGCTCAGCaagGATGTGTTCTATGTGACACGTCCCCCGCTGGCCCGCTCCAGCCCCGCCTACTGCACCAGCAGCTCTGACATCACCGAGCCAGACCCCAAGGTGCTGAGTGTCAATAAGAGTGTGTCAATGATGGACCTGCAGGACTCGCGCATGAACAGCATCTCGAACCTGCAGTCGCTGGGCGGGACGACGGACTCGCTgtcgcagcagcagcaggcggCTGCCCTGCGCTTCCCGCTGTCCTTCCAGAACCCGCTGTTCCACCTGGCCGCCGATGGCCCCCAGCCGCCCCCCCCCCGCGGGATGCACCCCCAGCTCTCCCAGCACCAGCCCCCGCCGCCGCTCCTGCTGGCCCCCGAGCCCCACTCCGAGCCAACCCACCCCGCCTTCCTGCCCGCCTTTGGCCACGGCGGCTTCTCCCGCAGCGAGGACCTGTCCTCCCTCAGGCCTGGGGGGCCAGGGGGACCGGGAGGGCTGGGCCAGCCGCCGATTATCCACTCCCACAGCTACAGCGACGACTACACCCGGCAGAACCAGGCTGACTCAATCGCCCCACCCCCACCGCAGCGCGTCAAATCACAGGCCTCACACCAGCTGTCTGTTAGCGCGGCCGCCACCCAGGCCCCGCCCCCAGCCCCGCCCAAAGTCCGCCCCCCAAGTGGCAACCTCCTCCAATCGCCGGAGTCGAGCTTTGGGGGCAGGCCCTCGCCTCGGCAACAGCTGTCCGTCAAAGACAGCCCCGCCCCAGGTCTGCCCCACCAGCAGAGCTCCGTGCGCGAGCCTGGGGTCACGGCAGGGtcgcagggtggggggggtggctcTGGGGCTGCTGGAGGGCCAGGTGGGGGGGCGACTCAGAgcacacaaccacaacaacaacagcaacagcaacagcagcaacaatcACAGCAACAATCACAGCAACACCTACTGAAACCAGCAATCAGCAAACAGGGCTCTCAGTCCCCTTCCACGctgaacccccccacccctgcctcCGAGCGCACGGTCGCCTGGGTGAGCAACATGCCGCACCTGTCGGCCGACATCGAGAGCTCGCACATCGACAGAGAGGACTTCAAACTGAAGGAGTACAGCAAGAGCATGGACGAGTCTCGGCTGGACAGgGAGCAGCAGACCAGCAAGATCCTGCTGCAGTACCAGAGCCGCCTGGAGGAGAGCGAGCGCCGGCTGCGGCTGCAGCAGGTGGAGAAGGACTCCCAGATCAAGGGCATCATCAACAGGTACTGA

Function

GO: NA

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135461 lncRNA downstream 30970 33213 ~ 39349 (-) True G108329
TU135442 lncRNA downstream 48969 17554 ~ 21350 (-) True G108323
TU135481 lncRNA upstream 27648 117137 ~ 118399 (-) True G108349
TU135445 lncRNA upstream 39236 128725 ~ 225141 (-) False G108324
TU135452 lncRNA upstream 39236 128725 ~ 225141 (-) False G108324
TU135462 lncRNA upstream 51070 140559 ~ 175193 (-) True G108330
TU135451 lncRNA upstream 63743 153232 ~ 225141 (-) False G108324
AMCG00006203 mRNA downstream 26192 10483 ~ 44127 (-) True AMCG00006203
AMCG00006212 mRNA upstream 10413 99902 ~ 108542 (-) True AMCG00006212
AMCG00006209 mRNA upstream 52583 142072 ~ 146398 (-) True AMCG00006209
AMCG00006210 mRNA upstream 57882 147371 ~ 150061 (-) True AMCG00006210
AMCG00006213 mRNA upstream 74113 163602 ~ 165518 (-) True AMCG00006213
AMCG00006214 mRNA upstream 76431 165920 ~ 172382 (-) True AMCG00006214
TU135453 other upstream 131782 221271 ~ 225141 (-) True G108324
TU135530 other upstream 247247 336736 ~ 339948 (-) True G108379
TU135541 other upstream 305935 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 390093 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 641952 731441 ~ 735410 (-) False AMCG00006245

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027474 True 3768 mRNA 0.60 19 NC_007130.7 233143 ~ 276193 (+)
grasscarp (Ctenopharyngodon idella) CI01000117_00263368_00291106.mRNA True 6446 mRNA 0.46 19 CI01000117 262281 ~ 292745 (-)