RNA id: AMCG00006213


Basic Information

Item Value
RNA id AMCG00006213
length 1053
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00006213
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 163602 ~ 165518 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCATGTTGTTTGCTTTCACTTCCGCATTCGTGGCGTCAGGATTCTTGAGGTGGAGAAACAGGCTCTGTCTCCACGGTCTGGGTTCACGGGCTGCAAGCTGGCGTGGACGGGGTCTCCAGTCGGGAGCTCGTATTACCAGCCTTCCCCCAGGACGGGAGCGCAGGGTCGGTCTCCGCCATCCTTCACTTTCGTGGGAAGTGCACCAGACACGGTCCTGCCCGGCCACACGGGCGCCgccatCGACAGCGAGCCGTTCGTCTCTCTGGACATGGGCGTGGTCAGCAGCAGCCCCCCCCAGGCCGACTCCACGCTGCCCCCCCCCTCGCCGCCCCTCGTCTCCAGCTCGCAGACCAGCCCCCCCCAGAAACGCCGCAaggtCAGCGTGGGGACGCAGTGTGACCCAGAGGAGGTGATCGTTCTCTCGGACTCAGACTGACCTCCAGTGGGGGGGTTGTGACCTCTGGCCCCTCCTGGCAAAACAGAACCCCCCCTCTCAGTGGGATACAACTGCTCCGATTCCACCCAACAACACAAcctcgctgtgtgtgtgtgtgagcatcaGAGACTGTGTGAGCANNNNNNNNNNtgtgtgtgtgtgtgtgtgagtgagtgagtgtttaTGTCTCATCGTGAGAGGGAGGGAAGCTGAGGGGGAGAGGATCGGGGGTTAATAATCCAGCTGTCATTAGTGATCATGCTTTTAGGCTGTCATGAATTTGGGTCTCTGTCCTGGGGGGCTGTGAGGATCAGTCCCCCTTCTGAGGAAGAGGCTGAGACACagagcagctggaggaggagaggacCGTGCTGGGAGGGTAGTGCTGGGGAATGTCTCGTTCTCTCCATCACACAGGGATCACTTTTAAAACCCAGAGTGTGGCTCCATCACCTCACTGCCCCCCCTGCTGAGAACAGCAGATTCATTTTGTATGGGATTTGGGAAGCCTCTCGGAGCAAGTGAGTGTGTCtgagtgtatattgtgtgtttgtatatatttttctaattgaCGAAGTGGAGACTCTGAATGGGGGGGTGTTGctgttgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135481 lncRNA downstream 45203 117137 ~ 118399 (-) True G108349
TU135461 lncRNA downstream 124253 33213 ~ 39349 (-) True G108329
TU135442 lncRNA downstream 142252 17554 ~ 21350 (-) True G108323
TU135502 lncRNA upstream 105238 270756 ~ 278261 (-) True G108365
TU135526 lncRNA upstream 168270 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 171218 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 199760 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 269883 435401 ~ 435621 (-) True G108397
AMCG00006210 mRNA downstream 13541 147371 ~ 150061 (-) True AMCG00006210
AMCG00006209 mRNA downstream 17204 142072 ~ 146398 (-) True AMCG00006209
AMCG00006212 mRNA downstream 55060 99902 ~ 108542 (-) True AMCG00006212
AMCG00006211 mRNA downstream 74113 70319 ~ 89489 (-) True AMCG00006211
AMCG00006203 mRNA downstream 119475 10483 ~ 44127 (-) True AMCG00006203
AMCG00006214 mRNA upstream 402 165920 ~ 172382 (-) True AMCG00006214
AMCG00006219 mRNA upstream 15866 181384 ~ 195349 (-) True AMCG00006219
AMCG00006220 mRNA upstream 70808 236326 ~ 242133 (-) True AMCG00006220
AMCG00006222 mRNA upstream 90819 256337 ~ 262432 (-) True AMCG00006222
AMCG00006221 mRNA upstream 98119 263637 ~ 266881 (-) True AMCG00006221
TU135453 other upstream 55753 221271 ~ 225141 (-) True G108324
TU135530 other upstream 171218 336736 ~ 339948 (-) True G108379
TU135541 other upstream 229906 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 314064 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 565923 731441 ~ 735410 (-) False AMCG00006245

Expression Profile