RNA id: AMCG00006216



Basic Information


Item Value
RNA id AMCG00006216
length 1068
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00006216
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 205137 ~ 213351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCGACTGGTGATCCTGGCCCTGTGCGCCATCCAGGCGGCGACTGCCGagAGCCACTCCCTGCACTATGTCAGCACTGGGACCTCAGGGATGCCCGAGATTCCCAACATGGTTCTAGAGATGCTGGACCAGGAGGAGCTCAGTTATTATGACAGCAGAACCGGGGAGACCGTCCCTAAGCAGGACTGGGTGAAGGACGGGCCAGAGGACTGGAAGGCGAACACAAAGAAAGCGTCTTCTGTGCTGCAGACTGTGAAAGAGCAGCTGAAGGGTGTCCACACTCTGCAGCAGGACTACGGCTGTGAGCGAGACCCAGACGGCTCCACTCGCCTGTTCTGGAAGCTGGGCTGTGACGGGCAGGACTACCTCACCCTGGACACCAGCACCTGGACCTGGACCACTGTCAACCACAGGGCCGTCAAAGAGCTGCAGCTGGAACCAGACTCAGAGTTCACCGACAAAGCAAGGACCTACCTGGAGCAGAACTGCCAGTGGCTGGACAAGTACGTGAGGCGCAAGAGAGCGGCTCCTGCTCCGCAGATGAAGGGTACACACTCCCTGCGTTACTTCTACACCGGCAGCTCAGGAATGACAGAGTTCCCTGAGTTTGTGATTGTGGGGATGGTGGACAATGAGCCCTTCATTTACTACGACGGCAACATCCGCAGAGCGACTCCGCGGCAGGACTGGATGGCCAAGTCTGTGGGGGCTGATTACTGGGAGGAGCAGACTCAGATCATCATCGACTGCGTTTGGAGACAcggtgctctgtgctgtgacCGCTGTGGGACTGTGGGCTGTCACTGCGCTGTGCACATCCCCCGGAGTGAAATCCTCACTGGGTCCTGTATCGGGGTCTCGGTGGGTCCGACAGTTAGAAAGCCACTGGGCGGTGTGTCACGCAGTGGAGGGCATGGAGGCCGAGCCTCAGAGTTCTTGGAGGTCAGATTTAAACAGTGGGTGTTTGTTTCCGAGGCATGTGTCAAGGCGTGTGTCATGCTCTGGACAGTGCTGCCCCTCCATCCCATTATCCAGAGCAGTGCCGAGGGCCAGTCCAGCCTGAGATAA

Function


GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135276 lncRNA upstream 29935 132006 ~ 175202 (+) False G108193
TU135275 lncRNA upstream 29935 155293 ~ 175202 (+) True G108193
TU135303 lncRNA upstream 38981 163478 ~ 166156 (+) True G108219
TU135253 lncRNA upstream 161224 17651 ~ 43913 (+) True G108182
TU135252 lncRNA upstream 183791 17651 ~ 21346 (+) False G108182
TU135327 lncRNA downstream 7920 221271 ~ 225353 (+) True AMCG00006218
TU135331 lncRNA downstream 50078 263429 ~ 264556 (+) True G108239
TU135341 lncRNA downstream 98203 311554 ~ 313413 (+) True G108248
TU135354 lncRNA downstream 160785 374136 ~ 392793 (+) True G108253
TU135359 lncRNA downstream 171046 384397 ~ 405340 (+) True G108256
AMCG00006205 mRNA upstream 23641 175725 ~ 181496 (+) False AMCG00006205
AMCG00006206 mRNA upstream 42697 156082 ~ 162440 (+) True AMCG00006206
AMCG00006207 mRNA upstream 51413 153452 ~ 153724 (+) True AMCG00006207
AMCG00006208 mRNA upstream 64479 133988 ~ 140658 (+) True AMCG00006208
AMCG00006204 mRNA upstream 71520 122870 ~ 133617 (+) True AMCG00006204
AMCG00006218 mRNA downstream 5753 219104 ~ 223117 (+) False AMCG00006218
AMCG00006217 mRNA downstream 28636 241987 ~ 256465 (+) True AMCG00006217
AMCG00006215 mRNA downstream 53283 266634 ~ 271647 (+) True AMCG00006215
AMCG00006223 mRNA downstream 60841 274192 ~ 278089 (+) True AMCG00006223
AMCG00006226 mRNA downstream 70313 283664 ~ 296397 (+) True AMCG00006226
TU135311 other upstream 25735 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 67116 134067 ~ 138021 (+) False AMCG00006208
TU135365 other downstream 216412 429763 ~ 433905 (+) True AMCG00006231
TU135436 other downstream 561458 774809 ~ 791062 (+) False G108319
TU135437 other downstream 561458 774809 ~ 791062 (+) True G108319
TU135656 other downstream 633210 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 772522 985873 ~ 990822 (+) False AMCG00006256

Expression Profile