RNA id: AMCG00006219


Basic Information

Item Value
RNA id AMCG00006219
length 3010
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00006219
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 181384 ~ 195349 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGTCAGACTGGGActgaggctgctgctgctgtggacCAAACTGGCGCTCTGTGAAGCGGTGCAGGGCTGGCTGCCTCTCAGTTCTCTCACGGCCGCTCTGAGCTCCTGGACCTCGGCTCTGTGCTCGTTCTTCAGCCTGTGCACCTGGTCCCTGAGCTGGTCCGCTGGGCTGGGCTGGTCCAGGGTGGCCAGTGTGTGCTCCATGCGCTCCCTGAACGGCTCCAGCATGGACAGGCACTCCTTCAGGGCTCTGATGTTGGTGCTCTGTTTCGGGGAGTCGGTGCCAGGACTGCACTGGGGGTTGGAGGGCAGGCTGGGGTGCCAGGGCACCCTGCTGGTCCTGACGCCGCTCCCCGCATCCGCCTGGGCCCCCCAAGGCCCTCCCCGCCTGCCCCCTCTGCTGTGGGCCCTGTCTCTGCCCCTGCGCACCACCCTGCAGCTCCGCGGGGTCGTGCCCTTTGACCCCAGCCCCGCCCCCCCACCGGGCCGCCCCGCCTGGCTGTGGGTGGTGGTCGGCGTGGCGACGGGGCTGGCGGTCGCTGCGGTGGCGGGGGCAGCGGTCGTCGCGGCGATGAGGCTGAGGCGGAGGCGGGGGCCCGGGGGGCCGCAGGCCGAGCCCTGGACACAGCACACGCCACACAGGCCCCGCGAGAGAGGGGCCCCGGGGAGGACGCCGGGCGAGGAGCGCAGGAGCGATGGGGAGTGGAAGAAGAGAGGCAAGGATGCGGGGCGGAAGAGACGAGAGCCGCTGGGGGAGGACGCCATGCGCCTGCGtcctCTGAAACACGAAGTGGACTGTGGGAGTGACGGGGACATTACCCAGAGTTCCCTGGAGGAGGCGGGGCTTGTGGACAGGAAGTGGTCACTCCGGCAGGAAGATGACTCCATCTGCGATCACCGACCCCAGGAGCACAAGCACTTCCAGGTCATGGCTGGAGGACAACAATCCCctgTGTGGGAGGGGAACTCCAGCAGTCGGCTACGCTCTGGCACCAGTCATTGGTGCGGTCCGGACGGGTCGCTGGTTCTGATCCGGGCAGTGCGGAGTGGGCTGGACCGTGTTGCTGTGGAGCTGCTGAGAGCAGGAGTACCGGTCAACAACACAGACCACACTGgcCGCTCGGCGCTGCACTGGGCGTGTGCAggtgaGACGCCCCTCTTCCTGGCAGCTCAGCACGGCTGCTATGACACGGCCCGGCTCCTTCTCCTGCAGGGAGCCAATCAGGAGCTGGCAGACCGCCGAGGCCGTCGCCCCCTGGAGGCGGCCCGCGAGGGATTGCATCACCAGCTGCTGGAGCTGCTATTGGCCCACCGCGCCCAGGGCAGATACGTGCCCTTCCCTGTGGCCTCGGAGACAGCCTGGGAGGACCGTGCCTTCCCACAGTGCCCCTGGACTGGTGCTGCACCCCCCGGCCTTTCAGGGCGGAGTGCTTCATTTTCGGGGGTCATAAGTCATCGGGCGTCACCTCAATATCCCCCACACCTCCTCCAACCGCCAAGTGATAGGCTAGCAGGCAGAAGTGGGAGGGTCTCTCCGCAGCCCAGCCAATCAGCGACGGCCCTGGTCTCGCCCAGAATCCTAGGCCGCCAAGCCCGGCCAATCAGCACCTTGCAGGAAGTCACCTCagaggcagaggaagaggaggagccgGCGCGAGAGCAGGAAGTGGCCCGGGCAGCCACTCCCCACCTCCTGTCCACCAGCACCCAGCAGCCCACACCCAGACCGCGCTCCTTCTCCTGcacccagcatgcactgcggcaCCACCCCCCCGCCTCCAGCGGCCAATCACAGAGCCCCTCAGTCAAGGCAGCCGCGGAGACTGTAGACGCAGGTGGCCTGGGACCCGCCCACACAGAGCTTGGCCAATCACAGGAGGGCTCAGGTCCTGATGCTCTCAGCAACAGCCAAtcggagggggagacggagggagagaggaacTGTAAACACCTGAGAAGGAAACAGAAGCTGACTGAGAGTCCAGACACTGTCCAGACCGTACTGTAGAGAGAGACATTTACCTCCTATTTACCCTGATTtacatctctgtctgtctgtttcacaCACTTACTCTTCTCTGTGTCTAATTCTTTGCACAGTGTTTCCCCCCTCAGTGAACTGAAACACTGACTTCATTAGTGACGTGTTGCGCCTTCAGCTTTGTACACAAACATATATCAAGCTCTGATATTTCCACTGTCAATGTCCCTTGTGTTGGAGCTTCTTGAAATGGACATGACTGGGCCTTAGAGCAGAGGTGCTCTACTCAACTTCTGTCGCCCAAATATTGATTGATCCATGCATTGAATGGGCCGCATACAGCTAAAATGAACGTAAATAATTCAGTGTAATCTGCAATACTCAACCTCAGCTGCAATACAGGCTGTGATTATTGTTCTATCTAGAGATATAAGTAAGAACAACGTTACAGTTCACTTTTATATATAGCACAGACAAAGTAAGACGAAGCAAACCTAATATGGACTCCCTCCGTGGGGCTGCTGAATGGCTGGGGCTTTGTTGACTGAGACTCAGTCCGGGCAGCAGTGAGAGACGGCTTTTGTGTGAATATTCAGATTCCTGTTTCTCAGATTGTTCTCACACTGTACCAGCGGGACACCTCTTGTGAATCCTGCGTGTTTAGTTTCACAGTGTAGCCCGGTTTTATTAAATGTCTTGCAAACTTGAGGAGCAAAGCTTACCATCTTCATTTACACAGAACAACTCTTCCCACTCTTTACTAACGGTTCGGTGCTGTTTGGATTaaactttccttttccttttcactgATTTCTATGGTGTTGTTTCTGTGTCACACCCCAGTTTTCTTTCTAAGATAAACATATTAATCTTTTGGAGTATCTTGTTAATCACCATTAGAAGTGTTTGGACTACTGGACCAGAACAGAGGTGCCTGACGAGGCCACACTCGGCACACACAGCATGTGTTAGTGACGTTACACACTAATGTTTCTCGTTGTAGGTCCTGCTTTCCTGCctcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135462 lncRNA downstream 6191 140559 ~ 175193 (-) True G108330
TU135481 lncRNA downstream 62985 117137 ~ 118399 (-) True G108349
TU135461 lncRNA downstream 142035 33213 ~ 39349 (-) True G108329
TU135442 lncRNA downstream 160034 17554 ~ 21350 (-) True G108323
TU135502 lncRNA upstream 75407 270756 ~ 278261 (-) True G108365
TU135526 lncRNA upstream 138439 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 141387 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 169929 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 240052 435401 ~ 435621 (-) True G108397
AMCG00006214 mRNA downstream 9002 165920 ~ 172382 (-) True AMCG00006214
AMCG00006213 mRNA downstream 15866 163602 ~ 165518 (-) True AMCG00006213
AMCG00006210 mRNA downstream 31323 147371 ~ 150061 (-) True AMCG00006210
AMCG00006209 mRNA downstream 34986 142072 ~ 146398 (-) True AMCG00006209
AMCG00006212 mRNA downstream 72842 99902 ~ 108542 (-) True AMCG00006212
AMCG00006220 mRNA upstream 40977 236326 ~ 242133 (-) True AMCG00006220
AMCG00006222 mRNA upstream 60988 256337 ~ 262432 (-) True AMCG00006222
AMCG00006221 mRNA upstream 68288 263637 ~ 266881 (-) True AMCG00006221
AMCG00006229 mRNA upstream 92342 287691 ~ 290685 (-) True AMCG00006229
AMCG00006228 mRNA upstream 100857 296206 ~ 299137 (-) True AMCG00006228
TU135453 other upstream 25922 221271 ~ 225141 (-) True G108324
TU135530 other upstream 141387 336736 ~ 339948 (-) True G108379
TU135541 other upstream 200075 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 284233 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 536092 731441 ~ 735410 (-) False AMCG00006245

Expression Profile