RNA id: AMCG00006220


Basic Information

Item Value
RNA id AMCG00006220
length 732
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00006220
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 236326 ~ 242133 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCCCTTTCACCCAGTCCTGTCGCGGGGCCACTTCATTCACTGCATCGAAGTAGCTGATATGGTCATTATCCAGCACCCCAACTATGAAGATCCTGGCTGTTCCCGGCACGCTCTGGGTCCCAGTGCAGACAGAGTGGGGGAcgaatatttgtttaatattgatttatcgATGGCCTGTTATTTCCCCTCAGCCACCCACTCCCTGCGCTACTTCTACACGGCTATCTCTGGTGTCAGTGGGCTCCCAGAGTTCTCCATCGTGGGGCAGGTGGATGGGCAGCCGTTTGTCTACTATGACAGCAACACGCAGAGGATGGTGCCCAAGACCAGCTGGATGGAGCGGAGCGACAGGCCTCAGTACTGGGAGAACCAGATTGGTGCTGCTCATAATGCTCATCTGATCTTGCAGGAGGGTTTGGTGACGGTGATGCAACATTTCAACCACAGTGCAGTCCTCCCAGAGGTGTATGTTATACAAAAGAGTGCTGGACCTCATACAACTGAGCTGTCCTGCCTGGCCACGGGCTTCTCCTCCCAAGACGTGGTGCTGTCCTGGCAGAGAGATGGACAGGAGCTGCATGAGGGGGTGGAGAGCGGGGAGCTGCTGTCCAACGGGAACGGGACGTACCAGGTCAGGAAGAGTGTGAGGGTCTCGCCTGAGGACCTGGAGGGACACACCTACACGTGCCATGTGGACCACCTGGGAGAGGAGATCGTCAAGGAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135447 lncRNA downstream 11185 85489 ~ 225141 (-) False G108324
TU135445 lncRNA downstream 11185 128725 ~ 225141 (-) False G108324
TU135452 lncRNA downstream 11185 128725 ~ 225141 (-) False G108324
TU135451 lncRNA downstream 11185 153232 ~ 225141 (-) False G108324
TU135444 lncRNA downstream 11185 161161 ~ 225141 (-) False G108324
TU135502 lncRNA upstream 28623 270756 ~ 278261 (-) True G108365
TU135526 lncRNA upstream 91655 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 94603 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 123145 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 193268 435401 ~ 435621 (-) True G108397
AMCG00006219 mRNA downstream 40977 181384 ~ 195349 (-) True AMCG00006219
AMCG00006214 mRNA downstream 63944 165920 ~ 172382 (-) True AMCG00006214
AMCG00006213 mRNA downstream 70808 163602 ~ 165518 (-) True AMCG00006213
AMCG00006210 mRNA downstream 86265 147371 ~ 150061 (-) True AMCG00006210
AMCG00006209 mRNA downstream 89928 142072 ~ 146398 (-) True AMCG00006209
AMCG00006222 mRNA upstream 14204 256337 ~ 262432 (-) True AMCG00006222
AMCG00006221 mRNA upstream 21504 263637 ~ 266881 (-) True AMCG00006221
AMCG00006229 mRNA upstream 45558 287691 ~ 290685 (-) True AMCG00006229
AMCG00006228 mRNA upstream 54073 296206 ~ 299137 (-) True AMCG00006228
AMCG00006227 mRNA upstream 69091 311224 ~ 321088 (-) True AMCG00006227
TU135453 other downstream 11185 221271 ~ 225141 (-) True G108324
TU135530 other upstream 94603 336736 ~ 339948 (-) True G108379
TU135541 other upstream 153291 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 237449 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 489308 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 495127 737260 ~ 740289 (-) False AMCG00006245

Expression Profile