RNA id: AMCG00006221


Basic Information

Item Value
RNA id AMCG00006221
length 795
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00006221
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 263637 ~ 266881 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTCGTATTAGTAGTGTATGGAGGTTACAATCTGATGGTATGAGCGTAAGGATAAATTCCCAACAAtggcaacattgtgtttgcAGGGGTAGTAGTACAGTAACGAGTTCGTTTACAGTTCGGTCACTGTGCTGAAGAGGGCGCTATTTCACAAGCCTCAGTCCCGATTGTTGCAGCTCCGAGGGCGCAGTCGACGCGCAGCACCTCCGCCCGAGCGAGCGACCTGCGCGGCTACGCGGGGCACCATGGACCGCTCACACGGAGAATGGCGGTCGGCTGAAGTGAGCACCGGGACCACTATCATTGCAGTGCGCTACAATGGGGGGGTGGTGATTGGATCAGATTCCAGAGCTTCAATGGGAGGAACATACGTGTCGTCACGCGTGATCAACAAAGTGGTTCAGGTCAGCGACAAGATCTTCTGCTGCATGTCCGGCTCACTGGCCGACGCCCAGGCAGTCACCAACGCGGTCATCCACCAGCTCAACTTCCACAGGGACTTCTGCTATAAGTACAGAGACGAGTTGAGCGCAGGATTCATAGTGGCTGGCTGGGACTGCAAGAAAGGACCACAGGTGTTTCAGGTGTCTCTGGGTGGCACAGTGCTGGAACAGGAGTTCACTATCGGGGGCTCTGGGGGGACCTACATCTATGGCTACGCAGATGCCAAATTCCGCTCCGGGATGACCAGGGAGCAGTGCCTGACCTTCACTACCAACGCCATCGTGACAGAGGCAGGCGTGGAGAGACAGCTGATCCCTGGAAACAAACTGCCCGTCTTCCACCGCATATGA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135451 lncRNA downstream 38496 153232 ~ 225141 (-) False G108324
TU135444 lncRNA downstream 38496 161161 ~ 225141 (-) False G108324
TU135443 lncRNA downstream 38496 161527 ~ 225141 (-) False G108324
TU135450 lncRNA downstream 38496 161527 ~ 225141 (-) False G108324
TU135462 lncRNA downstream 88444 140559 ~ 175193 (-) True G108330
TU135502 lncRNA upstream 3875 270756 ~ 278261 (-) True G108365
TU135526 lncRNA upstream 66907 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 69855 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 98397 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 168520 435401 ~ 435621 (-) True G108397
AMCG00006222 mRNA downstream 1205 256337 ~ 262432 (-) True AMCG00006222
AMCG00006220 mRNA downstream 21504 236326 ~ 242133 (-) True AMCG00006220
AMCG00006219 mRNA downstream 68288 181384 ~ 195349 (-) True AMCG00006219
AMCG00006214 mRNA downstream 91255 165920 ~ 172382 (-) True AMCG00006214
AMCG00006213 mRNA downstream 98119 163602 ~ 165518 (-) True AMCG00006213
AMCG00006229 mRNA upstream 20810 287691 ~ 290685 (-) True AMCG00006229
AMCG00006228 mRNA upstream 29325 296206 ~ 299137 (-) True AMCG00006228
AMCG00006227 mRNA upstream 44343 311224 ~ 321088 (-) True AMCG00006227
AMCG00006230 mRNA upstream 77894 344775 ~ 352314 (-) True AMCG00006230
AMCG00006232 mRNA upstream 126951 393832 ~ 397899 (-) True AMCG00006232
TU135453 other downstream 38496 221271 ~ 225141 (-) True G108324
TU135530 other upstream 69855 336736 ~ 339948 (-) True G108379
TU135541 other upstream 128543 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 212701 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 464560 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 470379 737260 ~ 740289 (-) False AMCG00006245

Expression Profile