RNA id: AMCG00006222


Basic Information

Item Value
RNA id AMCG00006222
length 439
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00006222
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 256337 ~ 262432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGTAGCAGTGGCGCACGTCTCTATTAAAATCATTGTATAACTATAGATATATACTTTATATCTAGAAAAACGCTTTGGGATTATAGAAACAGACAGCAGCAACGATGCAGACAGGGCTGGGGTCCGGGTCCGGGTCCGGGTTGGCGCTGGGGACGACGATTATAGCGATAGAggaTTCGGTGGTGAACAGGGTGATGAATAAGCTCTCTCCTCTCCATGACAAGGTGTACTGCGCGCTAAACATCTCCTACAAGTACAAGGAGGAGCTGTCAGCGCACCTGATCGTGGCCGGCTGGGACCGCCGCCGGGCTCTGACGCTGGCTATGGGCCGAGACGGCTCCAGTGGGGGCGTGGCCTATCTCGTCACCATTGAGAAGGAAGGTGCCCAGGAGCAGTGCATCCTGGGAAACCAGCTGCCCACCTTCTTCGACCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135451 lncRNA downstream 31196 153232 ~ 225141 (-) False G108324
TU135444 lncRNA downstream 31196 161161 ~ 225141 (-) False G108324
TU135443 lncRNA downstream 31196 161527 ~ 225141 (-) False G108324
TU135450 lncRNA downstream 31196 161527 ~ 225141 (-) False G108324
TU135462 lncRNA downstream 81144 140559 ~ 175193 (-) True G108330
TU135502 lncRNA upstream 8324 270756 ~ 278261 (-) True G108365
TU135526 lncRNA upstream 71356 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 74304 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 102846 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 172969 435401 ~ 435621 (-) True G108397
AMCG00006220 mRNA downstream 14204 236326 ~ 242133 (-) True AMCG00006220
AMCG00006219 mRNA downstream 60988 181384 ~ 195349 (-) True AMCG00006219
AMCG00006214 mRNA downstream 83955 165920 ~ 172382 (-) True AMCG00006214
AMCG00006213 mRNA downstream 90819 163602 ~ 165518 (-) True AMCG00006213
AMCG00006210 mRNA downstream 106276 147371 ~ 150061 (-) True AMCG00006210
AMCG00006221 mRNA upstream 1205 263637 ~ 266881 (-) True AMCG00006221
AMCG00006229 mRNA upstream 25259 287691 ~ 290685 (-) True AMCG00006229
AMCG00006228 mRNA upstream 33774 296206 ~ 299137 (-) True AMCG00006228
AMCG00006227 mRNA upstream 48792 311224 ~ 321088 (-) True AMCG00006227
AMCG00006230 mRNA upstream 82343 344775 ~ 352314 (-) True AMCG00006230
TU135453 other downstream 31196 221271 ~ 225141 (-) True G108324
TU135530 other upstream 74304 336736 ~ 339948 (-) True G108379
TU135541 other upstream 132992 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 217150 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 469009 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 474828 737260 ~ 740289 (-) False AMCG00006245

Expression Profile