RNA id: AMCG00006226



Basic Information


Item Value
RNA id AMCG00006226
length 939
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00006226
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 283664 ~ 296397 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TATCCACAGCAGCCACAAACAGCCAACACAAAACAGCTCAGTGAAGGGCTTCATGTCAAAGCGTCATCGGTCCGAAACTTGAATGAGCCGCATCACAGACGCCAGCGCAGTCTGCCTTCCCCGCCTGCAACACGCACTGCACATGATGACAACCCCCACAGTGGCAGCAATCAGGACCAGGACTGCAGCAATGATCAATCTGACGATCACCGCCAGgCAGGAGTAGGTGTGTCCCTCCAGGTCCTCAGGCGAGACCCTCAGGCTCTTCCTGACCTGGTACGTCCCGTCCCCGTTGGGCAGCAGCACCCCCCCGCTCTCCACCCCCTCGTGCAGCTCCTGCCCGTCTCTCTGCCAGGACAGCACAATGTCTCGGGGGAAGAAGCCCGTGGCCAGGCAGGACACAGGGGAGCCGGGGTCCCTCTGGAGCAGAGACACCTGGGGGGCGActggagaaaagagagagagagagagagggagagagagggaccccacaacaacaacaacaataacaacaacaaccacccaCAGCTGAAGCCCCAGAGCGGTTTGGTTTTTCTGTTCCTCTTCCCAATAGACATGATAATGAAGGAGCTCCATAGCTCTGTCCTCAGCATGTCAAAAGACAAATACGAGTTGGTCTTCCAGTCCTGGACCTTCTCCAGCCACCCCTGTCGAGAGATCGGTTCCCTCATGTGGCTGTACAGCTGTGAGCTGCACGAGGGGGTGGAGAGCGGGGAGCTGCAGCCCAACGGGGACGGGACGTACCAGGTCAGGAAGAGCCTGAGGGTCTCGCCTGAGGACCTGGAGGTAAGTAACAGATGCCTCTTCCAGGCTGGCGTGTTTCACGTGGCAGGAGAATGTGTGCCAGAGCCTTTCCCAGCCGCTCAGTCTCAGGCTCTTTGTGACCTGGTACGTCCCGTCCCCATTGGGCAGCACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135331 lncRNA upstream 19108 263429 ~ 264556 (+) True G108239
TU135327 lncRNA upstream 58311 221271 ~ 225353 (+) True AMCG00006218
TU135276 lncRNA upstream 108462 132006 ~ 175202 (+) False G108193
TU135341 lncRNA downstream 15157 311554 ~ 313413 (+) True G108248
TU135354 lncRNA downstream 77739 374136 ~ 392793 (+) True G108253
TU135359 lncRNA downstream 88000 384397 ~ 405340 (+) True G108256
TU135353 lncRNA downstream 100766 397163 ~ 405264 (+) True G108252
TU135368 lncRNA downstream 139004 435401 ~ 435621 (+) True G108263
AMCG00006223 mRNA upstream 5575 274192 ~ 278089 (+) True AMCG00006223
AMCG00006215 mRNA upstream 12017 266634 ~ 271647 (+) True AMCG00006215
AMCG00006217 mRNA upstream 27199 241987 ~ 256465 (+) True AMCG00006217
AMCG00006218 mRNA upstream 60547 219104 ~ 223117 (+) False AMCG00006218
AMCG00006216 mRNA upstream 70313 205137 ~ 213351 (+) True AMCG00006216
AMCG00006225 mRNA downstream 2942 299339 ~ 302585 (+) True AMCG00006225
AMCG00006224 mRNA downstream 24274 320671 ~ 337280 (+) True AMCG00006224
AMCG00006231 mRNA downstream 130579 426976 ~ 433434 (+) False AMCG00006231
AMCG00006235 mRNA downstream 194308 490705 ~ 491797 (+) True AMCG00006235
AMCG00006233 mRNA downstream 251429 547826 ~ 562265 (+) True AMCG00006233
TU135311 other upstream 104262 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 145643 134067 ~ 138021 (+) False AMCG00006208
TU135365 other downstream 133366 429763 ~ 433905 (+) True AMCG00006231
TU135436 other downstream 478412 774809 ~ 791062 (+) False G108319
TU135437 other downstream 478412 774809 ~ 791062 (+) True G108319
TU135656 other downstream 550164 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 689476 985873 ~ 990822 (+) False AMCG00006256

Expression Profile