RNA id: AMCG00006227


Basic Information

Item Value
RNA id AMCG00006227
length 4636
RNA type mRNA
GC content 0.59
exon number 15
gene id AMCG00006227
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 311224 ~ 321088 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGCTCTGCCAGCCGAAGGGGCTCCGGGGCGGGGGCAGCAGCACGGCTGCCACCCCCTGCAGCGCCACACACACGGCCAGGTCACTGCCCAGCGCCGCCCCCCACACGGGGACACTGCGCAGCATCAGCAGTGGCTGGGCCGGGCTCATCACCAGGACCAGTCcagggctggactggactggactaggttgggctgggctgggctgggctggactgggctggactgggctgtgctgtgctgggctggACTGGTTTGGAGCCGATGCTCTTCAGAAGATGCCTCCGGCAGCGCTTCTCTCTGTGCGTGCGGTGCGGTGCGTCTGTGCGTCTGTGCGTGCTGCGTGTCCCGCAGGGGGCGCTCTGCTCTGCGCTGCGCTGGTCTGCTCTGCGCTGCGGGTCTGCGGGCTCTGCGCTGCGCTGCTCTGCGGGTCTGCGGGCTCTGCGCTGCGCTGCTCTGCGCTGCTCTGCGCTGGTCTGCGCTGCTCTGCGGGTCTGCTCTGCTCTGCGCTGGTCTGCTCTGCGCTGCGGGCtctgcgctgcgctgcgctgctCTGCTCTGCGGGTCTTTTGGCTCTGCGCTGCGCAGGGCTGCTGTTCTCACAGGAGCTTCAGGCGTCAAGCAGCAGTAATGCGCTAATGCTGCGCCTCGTATCTAAAACAAGCGCATATCACACACTCACCCCAGTGCCGCTGCGGATGGTGGGCGCGACGGatccagtgtttttttctggtttctgtCTTCCTGTACATAAACTAGTTTCGGTTTCGTGCCAGGATTTATATAGTGGGCGGAGCACCGAGGCAGAGCACGCACAGCCGCCGGACAGCGGACACGCACAGCCGCCGGACAGCGGACACGCACAGCCGCCTGCGCTCTGCAGTCTCACTCAGATAACCAAGAGTAACCCCGAGCCGGCCGGCAGaccACTGacccatccctctctctgtcactaTGAGGCTCTGGCTCTCTCTGActctgctgctctgtgctgaCCTGGGTGTCGTACAGCTGCTGCGCTGGGCCCACCTCTCCtactcttcctcctctcccaccTCCGCTCCCTCCTCCGCTCCCTCGCTCCAGCACCAGCCCCTCATCACAGTGTGGGGGGGCGGCCTGCTGCGcgccctgctcctcctcctcctgtctgTCCCCCTGTCCCTCCCCGTCTCCCTGGGCCCCCCGCTGGTCGTGCTGTTCCTGCTCTGCCCCTCGTACTGCTCTCTGCGCCGGGCCCTGGCACTGCCCTTGGCAGAGCTGCAGTGGGGTTGGCACTCCTGGCCCTGGGTGTTGCAGGGGTACCTGGTCACGGCGGTGGGGGTGTTACTGTACCGGCGCTATGGCCCCTCCCTCTGCGCTACCGCCCCCACCTCATCCAGCGCTCCGGCAGCGGGCGTGTCTCTGCGGCGGCTCCTGGGGTACATGCGCCCCGACGCCAAGAAGTTCGGGTTCATCGGCGTCTTCCTGGTGGTCTCCTCTCTGGGAGAGATGGCCATCCCCTTCTACACGGGCCGGATGACGGACTGGATCATGAACGAGGACGAGCCCGAGGCCTTCACTCACGCCATCACCGCCATGACCCTCATCACCGTCATGAGTGcggtgtgtgagtttgtgtgtgaccTGATCTACAACGTGACGATGAGTCTGATCCACACGCGCATCCAGGGGCTGGTGTTCAGCTCGGTGCTGAAGCAGGAGATCGCCTTCTTCGACAGCATGCACACCGgtGACATCGTGTCCCGGATcaccacagacacaaacacgATGAGCGAGTCTCTGAGTGAGAAGCTCAGTCTGCTCATGTGGTACCTGATGCGCGtgctcttcctcttctccttcatGCTGCGTCTGTCCGGCCGCCTGGCCCTGTTCACCGCGCTGGGGCTGCCGCTCATCTGGCTCTCCCTGTCGGCGAAGGTGCAGAGCTCCCTGGCCAAGGCCAACGACGTCGCCACAGAGACGTTCTCGCTGATTAAGACGGTGCGCAGCTTTGCGAACGAGGAGGGGGAGGCGCGGCGCTACGCGGAGCGGCTGGAGGAGACGTACACGCACAACAAGACTGAGGCAGCCGCCTACGCCCTATCCACCTGGACCAACAGCctgTCCAGTCTGGCTCTGAAGGTCAGTATCCTGTACTACGGGGGCCGGCTGGTAACTGGAGGCGATGTGTCCAGCGGCGACCTGGTGTCCTTCGTGCTGTATGAGCTGCAGTTCACCTCGGCCGTTGAGgtgCTGTTGAATTATTACCCCCACGTGAAGAAGGCGATCGGGGCGTCAGAGAAGATCTTCGAGTTCATGGACCGGGAACTGCTGTTGCCCCCTGAGGGTCACCTGGCGCCCAAGCACCTGCGGGCCCTGGTGGGCCCCTCAGGGGGGGGGAAGAGCACCTGCGTGTCTCTGCTGGAGAGATTCTACCAGCCACAGCAGGGACAAATCCTGCTGGACGGACAGCCGCTGTACAGCTACGAGCACCAGTACCTGCACCACAAGatCGCAGTGGTCAGTCAGGAGCCGGTGCTGTTCGCTCGCTCGGTGCAGGAGAACATCGCGTACGGTCAGGAGGAGGTGGACAAAGCCGAGGTCACCAGGGCAGCCAAGCTGGCCCACGCACACACCTTCATCGACGGCCTGCAGAGCGGATACGACACAGATGCGGGGGAGAAGGGAGGGCAGCTCTCCGGGGGGCAGAAGCAGCGCATCGCGATCGCCAGGGCGCTGGTCAGACGCCCCAcggtgctggtgctggacgACGCCACCAGCTCCCTGGACACTGAGAGCGAGCACAAGATTCACCAGGCGCTGCTGAACAGCTCTCGCGGCTGTGCGGTGCTGCTGATCGCCCACCGGCTGGCGGCCGTGGAGAGGGCTCACGAGATCGTGGTGCTGGAGGGGGGGCAGGTGGTGGAGAGGGGCTCCCACTGCCAGCTGCTGGAGAGGGGGGGCAGCTACTGGCGCCTGGTGCGGAAACAGAACACGGCCTTCCAGCGCACCGAGGGGACGGAGTGGACGAAGACACAGgaggactgagagagagagagggaggctgtGGACAGACCAGCCCACGGCACCTAGAGCAgcgcagtcagtcagtgtccatgcgtgcctctctctctctctctctccctctctcctatGAGCGGTGCATGTACTGAGTGTAACAGGCTCGTTACACTGACATCACCCCTCTGAgaatcagtacagtgttaaaccTCCTGCGCTGGGAGAGCCCATCTTTTGgcctctctgtttctctctctcagcgtAATGTTGaacccctgctctctctctcactgtttctctctctcagtacagTGTTGaacccctgctctctctctctggatggCCGTCCCTCACACTGTGAGATGTTGCCACTGTGTTGTGTACCTCAGTCCACCTCAGACACGCTGCCCGGACGTACAAATTCCTCCAAGATTAAAAAAGGTTAATCCACCTTTCAAATTTATTCCTGGGTTAAACCTGTGGTCCAATAGGATACTatttctgtcttgttttaagAAATCTTTCATCTTGGGTTCATTTTGAACTATGATTAACTATAAAACCATGTCCACATTTGTGTGCATGCTGATCAGAGTACAATCCTCGATGTAATCAGATCGTGTCATTGCAATCTGCCCTGACTGTCCAGAGCCAGGGATGGCCAGCCCTGATTGACAGCCGATTACCTTCTGCTGTGTTCGGACACTGGAGCGTCTGATCCTGGCCTGGGGAGAGAACATATTATTGACCActctggtatttatttttaaagacaagaAAGCTCTGATTCCTCTCTACTGTGCATATGTAtctttgctgttgctgttgctgctgttgtacctGAGTTCAGGCAGGCCTTCCACAACCCATAATTTATGACTTCAGTAAAACCCAGACTGGACCCCAGTGCCACTCGCTCGCTCGCTCAGAGACCTGCAGCCCAGCCTGCCcctcacagtgcagtgtgtggacagACAGTGAGGGACGGAGAAAGGgacagtgagagaggagagagcgaCGACTGCACTGGGGCCGTGGCAGAGGGGCTGAATTTCCATTTTTCTCGCAGTCTGTACAGAAACCCTTGACAGCAGGACAACAAACAGCAGGGTCTCTTGTAACTCTGGACAGGAAGATCCAGGGCAGGACGTTGGCTCTGGGAGAGTCCagaggtgtgtgtatgtaatccAGTGATGTGTAAATATCTCCGTACAGGAGCCACTGCCTCACAGGCCTTTGGCCACCTGCTTCTCAATAAAACAATTCCTCCacttgcagtgtgtgtgtgtttttgtcagtgcgtgtttgtgtgtgtcgaTGTGTGCTGCTTGCAGTTGTACTAACACATTGCGGAGTCTGGAGAGAGAAGGGTTAAACTCTTCCAGTGTTTACGAGGGAGCCAGTCAATCTGCTCTGCCAGTCTCTGCCTGGACACTAGTGATGCTGACATGCTGATTGGctgaacagtttgttttttgcagccCATCAGAAGTGTCCAGGCCCTGAGTGCTGGGTAtcaatccatctctctctctcacagattCAGACGTGAGAAGTCCTTCACTGCTGTGACTTGTTACAGTATTGCAAAAACATTCATATTGATCATGCATTCATTGCTCTGATACCTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05653 ABCB2, TAP1; ATP-binding cassette, subfamily B (MDR/TAP), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135502 lncRNA downstream 32963 270756 ~ 278261 (-) True G108365
TU135451 lncRNA downstream 86083 153232 ~ 225141 (-) False G108324
TU135526 lncRNA upstream 12700 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 15648 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 44190 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 114313 435401 ~ 435621 (-) True G108397
TU135561 lncRNA upstream 158494 479582 ~ 480415 (-) False AMCG00006241
AMCG00006228 mRNA downstream 12087 296206 ~ 299137 (-) True AMCG00006228
AMCG00006229 mRNA downstream 20539 287691 ~ 290685 (-) True AMCG00006229
AMCG00006221 mRNA downstream 44343 263637 ~ 266881 (-) True AMCG00006221
AMCG00006222 mRNA downstream 48792 256337 ~ 262432 (-) True AMCG00006222
AMCG00006220 mRNA downstream 69091 236326 ~ 242133 (-) True AMCG00006220
AMCG00006230 mRNA upstream 23687 344775 ~ 352314 (-) True AMCG00006230
AMCG00006232 mRNA upstream 72744 393832 ~ 397899 (-) True AMCG00006232
AMCG00006238 mRNA upstream 187081 508169 ~ 511193 (-) True AMCG00006238
AMCG00006241 mRNA upstream 207966 529054 ~ 532720 (-) False AMCG00006241
AMCG00006240 mRNA upstream 218111 539199 ~ 539936 (-) True AMCG00006240
TU135453 other downstream 86083 221271 ~ 225141 (-) True G108324
TU135530 other upstream 15648 336736 ~ 339948 (-) True G108379
TU135541 other upstream 74336 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 158494 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 410353 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 416172 737260 ~ 740289 (-) False AMCG00006245

Expression Profile