RNA id: AMCG00006228


Basic Information

Item Value
RNA id AMCG00006228
length 735
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00006228
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 296206 ~ 299137 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCGAGCCCTGCTGGCCCTGTTCGCCGTCCAGTGCGCTTGTGCCGCAAACCACTCTCTGCACTATGTCTGCACTGGCGCCTCAGGCCCAGTGGCAGTGACGGAGGTGATTGTGGTCACCATGCTGGACAAGGAGGAGCTGAGTTACTACAACACCACAGTGGGTGAGGTGGTCCCTCGGCAGGAGTGGCTGAAAGATGAAGAGGGTTTACAGGGCTGGAAGATTAACTCCTATGTATCTGTTGACACCCTGAACTCTGTACGCACTGCAGGCATTGCAACACTGCAGCAGATGTGGGGCTGCAAACAGGGTGACGACAATGCAACCCGATATTTCTGGCAGTACGGCTACAAAGGCAAAGATTATCTCACCCTAGACACCAACACCTGGGCCTTCACCACCGTCAGTCCCTGGCATCCGCGCAGGACCCCGAGCTTGAAGAGTTCGAGGACGTACCTGCAGCAGCACTGCCTGGAGTGGCTGAAGAAGTTGCTGGAGCACGGCAGGGAGGCTCTGGACAGGAAAGtCCCCCACGAGGTGTCAGTGCTGCCCAATGGGGACGGGACGTACCAGGTCACAAAGAGCCTGAGACTGAGCGGCTGGGAAAGGCTCTGGCACACATTCTCCTGCCACGTGAAACACGCCAGCCTGGAAGAGGCATCTGTTACTTACTGGGGTAAGAGAGAGGCTTCACCAATGCCGATGATGCTTTTCAGATTGGCAGTGGAGTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135502 lncRNA downstream 17945 270756 ~ 278261 (-) True G108365
TU135451 lncRNA downstream 71065 153232 ~ 225141 (-) False G108324
TU135526 lncRNA upstream 34651 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 37599 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 66141 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 136264 435401 ~ 435621 (-) True G108397
TU135561 lncRNA upstream 180445 479582 ~ 480415 (-) False AMCG00006241
AMCG00006229 mRNA downstream 5521 287691 ~ 290685 (-) True AMCG00006229
AMCG00006221 mRNA downstream 29325 263637 ~ 266881 (-) True AMCG00006221
AMCG00006222 mRNA downstream 33774 256337 ~ 262432 (-) True AMCG00006222
AMCG00006220 mRNA downstream 54073 236326 ~ 242133 (-) True AMCG00006220
AMCG00006219 mRNA downstream 100857 181384 ~ 195349 (-) True AMCG00006219
AMCG00006227 mRNA upstream 12087 311224 ~ 321088 (-) True AMCG00006227
AMCG00006230 mRNA upstream 45638 344775 ~ 352314 (-) True AMCG00006230
AMCG00006232 mRNA upstream 94695 393832 ~ 397899 (-) True AMCG00006232
AMCG00006238 mRNA upstream 209032 508169 ~ 511193 (-) True AMCG00006238
AMCG00006241 mRNA upstream 229917 529054 ~ 532720 (-) False AMCG00006241
TU135453 other downstream 71065 221271 ~ 225141 (-) True G108324
TU135530 other upstream 37599 336736 ~ 339948 (-) True G108379
TU135541 other upstream 96287 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 180445 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 432304 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 438123 737260 ~ 740289 (-) False AMCG00006245

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047532 True 2984 mRNA 0.36 6 NC_007136.7 10987817 ~ 11001745 (+)