RNA id: AMCG00006229


Basic Information

Item Value
RNA id AMCG00006229
length 720
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00006229
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 287691 ~ 290685 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCGCGTTCCTGCTGTTTCTGGGCCACATCCAGACCTCTCTTCCCGAGTCTCATTCTGTAAAACTGATCAGGTGCATCTGTGTTGTAGTGCCTCACTGCCTGCAGTACGTCTGCACTGGGACCACAGGAATTCCAGCAGTACCAGAGATTGTGGTGGTAGGAATGATGGACAGTGAGGTCCTAAGCTATTATAACAGCACCATGAGGGAACCGATCTCTCGACAGGGGTGGCTGGAGAAGGTCCAGGACTGGAAGACCAACTCGTATTTGTCTTTTGACATGCTGAGGACCTTCAAAGCTCAAGTGAAGGGTAAGAGTAGCGTCAGTCAACCGGTTCTGCCCCTGAATACTGACAGAGCTATGGAGCTCCTTCATTATCATGTCTATTGGGAAGAGGAACAGAAAAACCAAACCGCTCTGGGGCTTCAGCTGtgggtggttgttgttgttattgttgttgttgttgtggggtCTGGTGTCGCCCCCCAGGTGTCTCTGCTCCAGAGGGACCCCGGCTCCCCTGTGTCCTGCCTGGCCACGGGCTTCTTCCCCCGAGACATTGTGCTGTCCTGGCAGAGAGACGGGCAGGAGCTGCACGAGGGGGTGGAGAGCGGGGGGGTGCTGCTGCCCAACGGGGACGGGACGTACCAGGTCAGGAAGAGCCTGAGGGTCTCGCCTGAGGACCTGGAGGGACACACCTACTCCTGcctggagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135502 lncRNA downstream 9430 270756 ~ 278261 (-) True G108365
TU135451 lncRNA downstream 62550 153232 ~ 225141 (-) False G108324
TU135444 lncRNA downstream 62550 161161 ~ 225141 (-) False G108324
TU135443 lncRNA downstream 62550 161527 ~ 225141 (-) False G108324
TU135450 lncRNA downstream 62550 161527 ~ 225141 (-) False G108324
TU135526 lncRNA upstream 43103 333788 ~ 343011 (-) False G108379
TU135528 lncRNA upstream 46051 336736 ~ 343011 (-) False G108379
TU135507 lncRNA upstream 74593 365278 ~ 368624 (-) True G108366
TU135552 lncRNA upstream 144716 435401 ~ 435621 (-) True G108397
TU135561 lncRNA upstream 188897 479582 ~ 480415 (-) False AMCG00006241
AMCG00006221 mRNA downstream 20810 263637 ~ 266881 (-) True AMCG00006221
AMCG00006222 mRNA downstream 25259 256337 ~ 262432 (-) True AMCG00006222
AMCG00006220 mRNA downstream 45558 236326 ~ 242133 (-) True AMCG00006220
AMCG00006219 mRNA downstream 92342 181384 ~ 195349 (-) True AMCG00006219
AMCG00006214 mRNA downstream 115309 165920 ~ 172382 (-) True AMCG00006214
AMCG00006228 mRNA upstream 5521 296206 ~ 299137 (-) True AMCG00006228
AMCG00006227 mRNA upstream 20539 311224 ~ 321088 (-) True AMCG00006227
AMCG00006230 mRNA upstream 54090 344775 ~ 352314 (-) True AMCG00006230
AMCG00006232 mRNA upstream 103147 393832 ~ 397899 (-) True AMCG00006232
AMCG00006238 mRNA upstream 217484 508169 ~ 511193 (-) True AMCG00006238
TU135453 other downstream 62550 221271 ~ 225141 (-) True G108324
TU135530 other upstream 46051 336736 ~ 339948 (-) True G108379
TU135541 other upstream 104739 395424 ~ 395979 (-) False AMCG00006232
TU135562 other upstream 188897 479582 ~ 546146 (-) False AMCG00006241
TU135628 other upstream 440756 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 446575 737260 ~ 740289 (-) False AMCG00006245

Expression Profile