RNA id: AMCG00006233


Basic Information

Item Value
RNA id AMCG00006233
length 2105
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00006233
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 547826 ~ 562265 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTGTGAGACGAACATGACACAGTTTGAGTTTGAGTGGGAGCTGGACCAAGATGAACTGTTGTACGTGGATCTGGACAAGAAGGAGGTTGTGCAGAGACTCCCGGAGTTCGCTGAGGAGTGGGGTCCACCAGAGACAGCTGGTTTTGTAGCACAAACACAGGTTAACTGGGAGGCCTGCAAACATAATGTGGTAGCCTTTGCAAAAGGAGAAGGAACTCCAAAAGAGAAGAAAGAGATTCACTTAAACAGAGTGCTAATATTTGTCCAGTCTAACGTGAcggagggagaggtggagatgGAGTGGGACAGAGACGAGCTGTTCTATGTTGACTTTGACAAGCAGCAGGTGGTGCAGAGGCTCCCGGAGTTTGACACACAATGGCACATGGTGCCAAGCTATCCAGCACAAGAAACACAGGAGGTAGATACCATGAAGTATAATCTGAAAGCCCATGCTAAAGGAGAAGGTTTTCCAATGGAAGTGATAGACCCCCCAGTGGCTCGACTGTACCCTGAGGATGATGTGGAGGCGGGGGTCCCCAACACGCTCATCTGCTTCATCACTGACTTCCACCCCCCCGCCATCAGAGTGTCCTGGAGCAGGAACAACGAGCCGCTGACAGAGGGCGTCAGTGAGACCCAGTACTACTCTAACAGCGACTACAGCTTCCGGCTCTTCTCCTACCTGAGCTTCACCCCCCAGCCGGGGGATGTGTACTCCTGCACTGTGGAGCACATCGGCCTGCAGGAGCCCCTCACCCGACTGTGGGAGCCCGAGCTCCAGATGGACTCGGAGGCGAGGGAGACGGCGGTGTGTGCAGTGGGTCTGACCCTGGGGCTGCTGGGAGTGGTGTCTGGGACCATCTTCCTCATCAAGGGCAACAACTGCAACTGAGAGCGGAACAGtgcaaggacacacacacacacacctccgaCAGGCAGAAATCCACTGCTCAGAAAATCATGTCTagcaaaatgttaattatatttgatatattttttgtcatctTGCCAAAATGTTATTTCATGCACCTGGGAAACATTCCAGCACCTACCTTTGTATTATCttatctatttgttttattttgtcaatgtaCTAATTGTAACTGTGGTGAATTATCCCATTTTAGAATGAAGTCTGATTAGCTGCATTTGACTTGTAATCTAAAACTTCATGCTCTGGTGCTCCTGATTCCCCTGCTCTGTACACTCATCCACACTGTGATTCATTTGGTTTAAtgtatattgttcattaaactagtTTACCAATGAGATCTTCTAAGTTTCCTGACCATTCAGCAGAATGGTTTCCATCTCCAGGCATGAAGGTTTACAGTCCAGCAGGTTATTTTCAGGTCTTTAAATTAGCAGCACTTTTAGAGTGAGGTAAAGGCTTCACATAGACATACCAAATTAGACAAAGTTCACATGGGCAACAATAACCTGCTGGACTGTGGACCCTGAGGACTGTAGGAACCTCTGCCCATGAGCACTAGGATGCTGTTAATCTTAGGAGAGTTGTAACAGATTTTCTCAGTTGATTACACACTGTGACTGAAAAAGACACAAAGATCAAAAATTGAACTGTCACCGCCTACTGGCATTTAGGGGCGACACGCTACGCGACCATGCCACCTCCTTTGTTAAATGAGAGCGAACCTCGTTCACTCACACCAATTCTCTCCCTGGGCAGGCTCGACTGGAcaccagaacaccaccacacagacacattttcaacaatagtgatttatttttaaatagctagGACAGGGCACAAAGACTGTACCAGCAAGAAACACAATAAGTGAGGAATTGGGGaactaaatgtataaaacctaaatctgaaactgcctttaatacacTGGACAATAAAACGAATAAAACCCCAACCCAAAATAACACAAGAAATTAGGAAGTATACatacagtgaaaaaaaatatatttgatcccctgctgattttgtacgttagcccactgaaaaagaaattcTCAGGGAGTACATTCTTTTACTGCTGTTTTAAGGACAAGAATATGGTTGTCCAAAGTATGTATTTACTATGTTTGtggtatttaaattaaaaagtgtatttgattttcata

Function

GO: NA

KEGG:

id description
K06752 MHC2; MHC class II antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135368 lncRNA upstream 112205 435401 ~ 435621 (+) True G108263
TU135359 lncRNA upstream 142486 384397 ~ 405340 (+) True G108256
TU135353 lncRNA upstream 142562 397163 ~ 405264 (+) True G108252
TU135354 lncRNA upstream 155033 374136 ~ 392793 (+) True G108253
TU135341 lncRNA upstream 234413 311554 ~ 313413 (+) True G108248
TU135408 lncRNA downstream 87472 649737 ~ 652140 (+) False AMCG00006236
TU135427 lncRNA downstream 145792 708057 ~ 708928 (+) True G108312
TU135429 lncRNA downstream 165612 727877 ~ 730186 (+) True G108314
TU135434 lncRNA downstream 211394 773659 ~ 774039 (+) True G108318
TU135422 lncRNA downstream 219760 782025 ~ 782475 (+) True G108308
AMCG00006235 mRNA upstream 56029 490705 ~ 491797 (+) True AMCG00006235
AMCG00006231 mRNA upstream 114392 426976 ~ 433434 (+) False AMCG00006231
AMCG00006224 mRNA upstream 210546 320671 ~ 337280 (+) True AMCG00006224
AMCG00006225 mRNA upstream 245241 299339 ~ 302585 (+) True AMCG00006225
AMCG00006226 mRNA upstream 251429 283664 ~ 296397 (+) True AMCG00006226
AMCG00006234 mRNA downstream 7139 569404 ~ 576257 (+) True AMCG00006234
AMCG00006237 mRNA downstream 48202 610467 ~ 633814 (+) True AMCG00006237
AMCG00006236 mRNA downstream 82453 644718 ~ 650823 (+) True AMCG00006236
AMCG00006246 mRNA downstream 284349 846614 ~ 855720 (+) True AMCG00006246
AMCG00006252 mRNA downstream 326813 889078 ~ 895444 (+) True AMCG00006252
TU135365 other upstream 113921 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 368424 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 409805 134067 ~ 138021 (+) False AMCG00006208
TU135436 other downstream 212544 774809 ~ 791062 (+) False G108319
TU135437 other downstream 212544 774809 ~ 791062 (+) True G108319
TU135656 other downstream 284296 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 423608 985873 ~ 990822 (+) False AMCG00006256
TU135810 other downstream 718436 1280701 ~ 1286052 (+) True AMCG00006276

Expression Profile