RNA id: AMCG00006237


Basic Information

Item Value
RNA id AMCG00006237
length 1599
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00006237
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 610467 ~ 633814 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACCGCGGTTCAGCAGTGGTCCACGGTGCCAGAGCTGCCCCTCCATCTGCTACAGTGAGTCTGTGGTGCTAGTTCTGCATAAGGATATAAATGTAATCACCTGCCAGACTGACACCACAGAGACAGAGGATGAGGAACAGTTGGATGGAAATGAGATTTTTTATGTTGactttaacaacaacaaaatagttCTTACACTTCCTGAGTTTGCTGACCAATTGCAAGTTAATCCAGGATGGATTCAGGGGGCCCAGGCTAATAAACAGGTCTGCAAGAACAACCTTGACGTGGCTATACAAGCTGAAAAATCCCCTCCAGAGAACATAGATGCTCCTCAGAACACAATCTATCCCAGGGATGAGGTGGAACTCGGGAAGCCCAACACTCTCATCTGCTTCATTAATAACTTTTACCCGGCTATCGTCAAAGTGAAATGGACCAAGAACAATGTGGAGGTGACTGAGGGAGTCACTCTGAGCAACTACTATCCCAATGAGGATTTCACATTCCAGCAGTTCTCCACCCTGAGCTTCACTCCACAGCTGGGGGATGTCTACTCCTGCAGCGTTGAGCACAAGGCACTCACTGAACCAAAGACCAGGATCTGGGAGCCTGAAGTGAAGGCAGAGTCCAATGTGGGAGTGACGGCTTTCTGTGGGGTGGGTCTGACCCTGGGGCTGCTGGGAGTGGCGACTGGGACCTTCTTCCTCATCAAAGGGAACAACTGCAACTGAGACAGataACATTTGATGAAGACATTGCAGGCATGCCAGAGATTCAATTATTTCTGAAATCTactttctgtataattttttccctttaatttgctgtaaatattgttttgtaggccttatttctaatatttcttattctactttaaaatctgaatttaaatgtaaacattaccTATCATGTGATTTACTGAAAAgtcaaacattgtttttcatttcaattatcAGAAAACTTACAGTAAATTAACTTTAAAGTAATTACATAAAAGTTGGCacagaataacaaataaatacatttaaacattactttaaAGTTTATACTGtaatgttaatgaaaaatataaagttatagTTATAGAGTTATATTTAGTTACCTTATAGGGTGAAAGGGTAATCCTTTTTGCTGCTGttctggtatttaaaaaaacaaaaaaaagcaatggaaaCTAAGCTGAATATAGTGAAAAGCAGCTGCAGTAAATTTCAGCATTTGTGGCAAAATTATTAAAGCATGCAGGATACTATGGGTATGAGGTTTCGGATCAGATcagatttcaattttaattatttagttgtGATCAACAATATGTATTTGAGAAAGTATTAAAAGAAATGcccagaaaattaaaataatcaaccaGATCATTTTATTaccaaaaagttataaaatgtataaatccctggggtacataaaataaaccaaatttcCAAATGTGAATGTTGACTGACCATTCCCTGAGTGATGCATTATTAATGCTAAATCCCATCTCTGTCTCCAACATCCACACAAGGATTTGGATCAGGTGGTGcaatgaaagattaaataaaatgtcagactctagtctttgtgtgtttatctattta

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135368 lncRNA upstream 174846 435401 ~ 435621 (+) True G108263
TU135359 lncRNA upstream 205127 384397 ~ 405340 (+) True G108256
TU135353 lncRNA upstream 205203 397163 ~ 405264 (+) True G108252
TU135354 lncRNA upstream 217674 374136 ~ 392793 (+) True G108253
TU135341 lncRNA upstream 297054 311554 ~ 313413 (+) True G108248
TU135408 lncRNA downstream 15923 649737 ~ 652140 (+) False AMCG00006236
TU135427 lncRNA downstream 74243 708057 ~ 708928 (+) True G108312
TU135429 lncRNA downstream 94063 727877 ~ 730186 (+) True G108314
TU135434 lncRNA downstream 139845 773659 ~ 774039 (+) True G108318
TU135422 lncRNA downstream 148211 782025 ~ 782475 (+) True G108308
AMCG00006234 mRNA upstream 34210 569404 ~ 576257 (+) True AMCG00006234
AMCG00006233 mRNA upstream 48202 547826 ~ 562265 (+) True AMCG00006233
AMCG00006235 mRNA upstream 118670 490705 ~ 491797 (+) True AMCG00006235
AMCG00006231 mRNA upstream 177033 426976 ~ 433434 (+) False AMCG00006231
AMCG00006224 mRNA upstream 273187 320671 ~ 337280 (+) True AMCG00006224
AMCG00006236 mRNA downstream 10904 644718 ~ 650823 (+) True AMCG00006236
AMCG00006246 mRNA downstream 212800 846614 ~ 855720 (+) True AMCG00006246
AMCG00006252 mRNA downstream 255264 889078 ~ 895444 (+) True AMCG00006252
AMCG00006250 mRNA downstream 263164 896978 ~ 908806 (+) True AMCG00006250
AMCG00006251 mRNA downstream 290800 924614 ~ 929086 (+) True AMCG00006251
TU135365 other upstream 176562 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 431065 177138 ~ 179402 (+) True AMCG00006205
TU135297 other upstream 472446 134067 ~ 138021 (+) False AMCG00006208
TU135436 other downstream 140995 774809 ~ 791062 (+) False G108319
TU135437 other downstream 140995 774809 ~ 791062 (+) True G108319
TU135656 other downstream 212747 846561 ~ 848772 (+) False AMCG00006246
TU135722 other downstream 352059 985873 ~ 990822 (+) False AMCG00006256
TU135810 other downstream 646887 1280701 ~ 1286052 (+) True AMCG00006276

Expression Profile