RNA id: AMCG00006238


Basic Information

Item Value
RNA id AMCG00006238
length 681
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00006238
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 508169 ~ 511193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggttttttttttcttctcagtggGGCACCAGTTTATGAGTATGGACTTCTGTATTTCAAATATCACTGAGGCAGAGAATGAGGTGGAGACAGATGGGGATGAACTGTTCTACATCGATTTTGACCGAAAGGTGGCTGTTCAGCGCCTCCCTGATTTTTCAGTCTGGGATATAGATCCAGGAGTAATTACAATGGCACTTCAGAACAGAGATGTCTGCAGACAAAACGTGGAGGGCTTTGCTAAGTGTGAGAAATATCCGCCAGAGGAGCATGACCCTCCTACAGCAGTGTTGTATCCAGAGAACCAGGTCACCCTGGGGAAGCCCAACACCCTGATCTGCTACGTCACTGATTTCCACCCTCCCGTCATCACTGTGAGGTGGACCAAGAACGAGCTGCCAGTGCACCAGGGCATCAGCCAGACCCAGTTCTACCCCAATAGGGACTACACCTACAGGGTGTTCTCCTACCTGAACACCACTCTGGAGGCCGGAGACGTGTACTCCTGCAGCGTGGAGCACCAGACTCTGGACAAGCCCCTCACCAGGATCTGGGAGCCCGAGGTGCAGGCAGAGGCCGGTGTTGGAGCGACAGCGTTCTGTGGGGCGGGTCTGAtgctggggctgctgggagTGGTGACTGGGACTTTCTTCCTCATCAAGAGCAAAAACTGCAACTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135561 lncRNA downstream 27754 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 72548 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 139545 365278 ~ 368624 (-) True G108366
TU135526 lncRNA downstream 165158 333788 ~ 343011 (-) False G108379
TU135528 lncRNA downstream 165158 336736 ~ 343011 (-) False G108379
TU135606 lncRNA upstream 74349 585542 ~ 650826 (-) False G108427
TU135605 lncRNA upstream 134172 645365 ~ 712764 (-) True G108427
TU135624 lncRNA upstream 190286 701479 ~ 701940 (-) False AMCG00006243
TU135626 lncRNA upstream 214871 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 259918 771111 ~ 771337 (-) True G108451
AMCG00006232 mRNA downstream 110270 393832 ~ 397899 (-) True AMCG00006232
AMCG00006230 mRNA downstream 155855 344775 ~ 352314 (-) True AMCG00006230
AMCG00006227 mRNA downstream 187081 311224 ~ 321088 (-) True AMCG00006227
AMCG00006228 mRNA downstream 209032 296206 ~ 299137 (-) True AMCG00006228
AMCG00006229 mRNA downstream 217484 287691 ~ 290685 (-) True AMCG00006229
AMCG00006241 mRNA upstream 17861 529054 ~ 532720 (-) False AMCG00006241
AMCG00006240 mRNA upstream 28006 539199 ~ 539936 (-) True AMCG00006240
AMCG00006242 mRNA upstream 154393 665586 ~ 675760 (-) True AMCG00006242
AMCG00006239 mRNA upstream 165391 676584 ~ 686559 (-) True AMCG00006239
AMCG00006243 mRNA upstream 189342 700535 ~ 701901 (-) True AMCG00006243
TU135541 other downstream 112190 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 168221 336736 ~ 339948 (-) True G108379
TU135453 other downstream 283028 221271 ~ 225141 (-) True G108324
TU135628 other upstream 220248 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 226067 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 615369 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 704032 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 825994 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile