RNA id: AMCG00006240


Basic Information

Item Value
RNA id AMCG00006240
length 393
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00006240
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 539199 ~ 539936 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTTATCCCAACTATGACCTGGTGCTGGGGCAGCCCAACACACTCATCTGCTTTGCCAAAGGCTTCCACCCGATGCCTATAACGATGTCCTGGGCCAAGAATGGACAGccggtgacagagggagtgtcCCGCAGCCAGCTGTACTCCAATGACGACCTCACCTTCAGGACCTTCTCCTACCTGACCTTTGCCCCGGCGCCAGGGGACGTGTACTCCTGCCGCGTCGAGCACAGAGCTCTGACTGAGCCCGACACCAAGATCTATGAGGTGGAGGTTCACACAGTGTCGGATGTGGGGAAGACGGTGTTCTGTGGGGTGGGTCTGACCCTGGGGCTGCTGGGAGTGGTGGTGGGAACCTTCTTCCTCATCAAGGGCAACCACTGCAGCTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135561 lncRNA downstream 58784 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 103578 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 170575 365278 ~ 368624 (-) True G108366
TU135526 lncRNA downstream 196188 333788 ~ 343011 (-) False G108379
TU135606 lncRNA upstream 45606 585542 ~ 650826 (-) False G108427
TU135605 lncRNA upstream 105429 645365 ~ 712764 (-) True G108427
TU135624 lncRNA upstream 161543 701479 ~ 701940 (-) False AMCG00006243
TU135626 lncRNA upstream 186128 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 231175 771111 ~ 771337 (-) True G108451
AMCG00006241 mRNA downstream 6479 529054 ~ 532720 (-) False AMCG00006241
AMCG00006238 mRNA downstream 28006 508169 ~ 511193 (-) True AMCG00006238
AMCG00006232 mRNA downstream 141300 393832 ~ 397899 (-) True AMCG00006232
AMCG00006230 mRNA downstream 186885 344775 ~ 352314 (-) True AMCG00006230
AMCG00006227 mRNA downstream 218111 311224 ~ 321088 (-) True AMCG00006227
AMCG00006242 mRNA upstream 125650 665586 ~ 675760 (-) True AMCG00006242
AMCG00006239 mRNA upstream 136648 676584 ~ 686559 (-) True AMCG00006239
AMCG00006243 mRNA upstream 160599 700535 ~ 701901 (-) True AMCG00006243
AMCG00006244 mRNA upstream 171896 711832 ~ 720393 (-) True AMCG00006244
AMCG00006245 mRNA upstream 186167 726103 ~ 748736 (-) True AMCG00006245
TU135541 other downstream 143220 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 199251 336736 ~ 339948 (-) True G108379
TU135453 other downstream 314058 221271 ~ 225141 (-) True G108324
TU135628 other upstream 191505 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 197324 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 586626 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 675289 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 797251 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile