RNA id: AMCG00006241


Basic Information

Item Value
RNA id AMCG00006241
length 579
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00006241
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 479582 ~ 562415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGGACGAGACTTCTGGTGCTCCTCTTTTAAGAATCTCAGTGGTGATGATGTAGAGGGAGTGGTTTTTGCTCAGAGCTACGTTTTTAACCAAGAGGAGGTTATTCACTTCGACACCAATATCAAGAAATATGTAGGACGCACCGAATACGGGGTGAGCAATGCAGAGGAGTGGAACAAGGATACAGCCCAGATAGCAGTTTTAGTGGCTGAAAAGGATCGATATTGTAAACACAACGTGAATGTCTTCCGCAATGGCACACTGGACAGGAGAGttGCCCCCACCGTGTGGGTGGGCTCCAGTAAACCAGTGGGCTCCAAGACCCCCAACGTTTTGGTGTGCTACGCCAGCGGCTTCTACCCCCCGCAGATAACGGTCAGCTGGCTGAGGAATGGAGAGGAGGTGAAGGGCATCACCTCTTCAGAGATGCTTCCTGGTGGGGACTGGACCTATCAGGTCCATGTGTACCTGGAGACCCCCACCCAGTCTGGAGAGAAGTACACCTGCAGGGTGCAGCACAGCAGCCTCAGATCTCCCATTGAGGTGGACTGGGGTAATTGCACACCTGAAACATAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135561 lncRNA downstream 48639 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 93433 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 160430 365278 ~ 368624 (-) True G108366
TU135526 lncRNA downstream 186043 333788 ~ 343011 (-) False G108379
TU135606 lncRNA upstream 52822 585542 ~ 650826 (-) False G108427
TU135605 lncRNA upstream 112645 645365 ~ 712764 (-) True G108427
TU135624 lncRNA upstream 168759 701479 ~ 701940 (-) False AMCG00006243
TU135626 lncRNA upstream 193344 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 238391 771111 ~ 771337 (-) True G108451
AMCG00006238 mRNA downstream 17861 508169 ~ 511193 (-) True AMCG00006238
AMCG00006232 mRNA downstream 131155 393832 ~ 397899 (-) True AMCG00006232
AMCG00006230 mRNA downstream 176740 344775 ~ 352314 (-) True AMCG00006230
AMCG00006227 mRNA downstream 207966 311224 ~ 321088 (-) True AMCG00006227
AMCG00006228 mRNA downstream 229917 296206 ~ 299137 (-) True AMCG00006228
AMCG00006240 mRNA upstream 6479 539199 ~ 539936 (-) True AMCG00006240
AMCG00006242 mRNA upstream 132866 665586 ~ 675760 (-) True AMCG00006242
AMCG00006239 mRNA upstream 143864 676584 ~ 686559 (-) True AMCG00006239
AMCG00006243 mRNA upstream 167815 700535 ~ 701901 (-) True AMCG00006243
AMCG00006244 mRNA upstream 179112 711832 ~ 720393 (-) True AMCG00006244
TU135541 other downstream 133075 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 189106 336736 ~ 339948 (-) True G108379
TU135453 other downstream 303913 221271 ~ 225141 (-) True G108324
TU135628 other upstream 198721 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 204540 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 593842 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 682505 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 804467 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile