RNA id: TU135561


Basic Information

Item Value
RNA id TU135561
length 403
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id AMCG00006241
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 479582 ~ 562415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGGACGTATACTGGTCCCAACAAGCTAAGACACCTTCGAGCGCATGCAGACGGGTTTAATGGAAGAACAACGGAGGGGTTTGCagatacagaaatataaatgtcaaaCAAATGTGACCTGTGGAATTATAATCCAGTTCTAAACTTGTTGATAACTAATGTTGCACTTCAGGGGCCTCATGCAACTAcattttggggggagggggtggcaCAGTTGgacaacaaattaattatgttaCAAATAgtctatatttaatatttgtatctaCATCGTTAGAGTAATGTAGTAGGGTTGCACTAatggttattgtttttttgacatttttagtTTGAAGTCATTTCACTATATCCGGAAGTCTTTTCATGGTTAAATGACAACTCGTTCTGTGAATTCGCCAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135552 lncRNA downstream 43961 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 110958 365278 ~ 368624 (-) True G108366
TU135526 lncRNA downstream 136571 333788 ~ 343011 (-) False G108379
TU135528 lncRNA downstream 136571 336736 ~ 343011 (-) False G108379
TU135502 lncRNA downstream 201321 270756 ~ 278261 (-) True G108365
TU135557 lncRNA upstream 23388 503803 ~ 562415 (-) True AMCG00006241
TU135606 lncRNA upstream 105127 585542 ~ 650826 (-) False G108427
TU135605 lncRNA upstream 164950 645365 ~ 712764 (-) True G108427
TU135624 lncRNA upstream 221064 701479 ~ 701940 (-) False AMCG00006243
TU135626 lncRNA upstream 245649 726064 ~ 730186 (-) False AMCG00006245
AMCG00006232 mRNA downstream 81683 393832 ~ 397899 (-) True AMCG00006232
AMCG00006230 mRNA downstream 127268 344775 ~ 352314 (-) True AMCG00006230
AMCG00006227 mRNA downstream 158494 311224 ~ 321088 (-) True AMCG00006227
AMCG00006228 mRNA downstream 180445 296206 ~ 299137 (-) True AMCG00006228
AMCG00006229 mRNA downstream 188897 287691 ~ 290685 (-) True AMCG00006229
AMCG00006238 mRNA upstream 27754 508169 ~ 511193 (-) True AMCG00006238
AMCG00006241 mRNA upstream 48639 529054 ~ 532720 (-) False AMCG00006241
AMCG00006240 mRNA upstream 58784 539199 ~ 539936 (-) True AMCG00006240
AMCG00006242 mRNA upstream 185171 665586 ~ 675760 (-) True AMCG00006242
AMCG00006239 mRNA upstream 196169 676584 ~ 686559 (-) True AMCG00006239
TU135541 other downstream 83603 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 139634 336736 ~ 339948 (-) True G108379
TU135453 other downstream 254441 221271 ~ 225141 (-) True G108324
TU135628 other upstream 251026 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 256845 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 646147 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 734810 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 856772 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile