RNA id: AMCG00006242


Basic Information

Item Value
RNA id AMCG00006242
length 1083
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00006242
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 665586 ~ 675760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGATGTATTCCTCAGGGGGCAAATTCATTTCTGCACTCACTTCAGGGTCACGTCAGAGGAGCGAGGCAGCTGCACTGCCCTGTGAGCATGGAGTCAGTGCTGCGCTCACCCACAGTTCATGTCCTGACTGTGGTGACGCTGCTTCTGTGTGGCAAAACCCCTGGCTATGGAGTGGacGGTTACACATACGAGTGGGTAGTAGACTGTGATTTCAGTGGTGACGATGCAAAAGGCATCGTTTACTCCAGGAGACACATTTTCAATCAAGAGGAAATCATTCACTATGACAGCAACATCCAGAGATTTGAAGGAAACACGGCATTTGGAGTGAAGACTGCAGATTACTGGAACCAAGACGAGGCTCTTCTGCAGCGCCTGCTGGCGGACAAGGACAAGTTTTGTAAATTCAACATGGATGTCTTCAACGGCACCATGAACCGGAGAGTTCCTCCAGCAGTAAAAGTCTTGTCCACCAAACCAAGTGATTCCTCGCACCCGACCCTGCTGGTCTGTCATGCTGTGGGCTTCTACCCCCCGGGGATAGTGGTCCTCTGGCTGAGGAACGGAGAGGAGGTGAAGGGCATCACCTCATCAGAGCTGCTTCCCAATGGAGACTGGACCTACCAGGTCCACATGTACCTGGAGACCCCCACCCAGTCTGGAGATACATTCACCTGCAGGGTGCAGCACAGCAGCCTCGCCACCCCCATCGAGGTGGACTGGGACCACTCAGTGTCCAAGTCCAGGAGAAACAAGGTGATCATGGGTGCGTCCGGCCTGGTCCTGGGGCTGGTGATGGCGCTGGCTGGAGGGCTGTACTACTGGAAGAAGAAATCCACAGGTACAGAGAGCCTGTTAACATGGCCTCATGTTAGTGCCCACCAGTTAAGGGAGGCAAGGAACCTCGGGGAGAGAAAGCAGGACAATCAGGACATGTGCAGGAGTGCAGTTCAGAGGCCAGCCTGTAGGGGTGCTCTCAGCCAAGAGCACAGAATGAAGCTCCGCTGCTCGCACcccagtgtgtcagagtgtcgCTCTGCCCGGCGACTGGCGTCTCAGCAGCAGCtggctctgtga

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
K06752 MHC2; MHC class II antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135606 lncRNA downstream 14760 585542 ~ 650826 (-) False G108427
TU135557 lncRNA downstream 103171 503803 ~ 562415 (-) True AMCG00006241
TU135561 lncRNA downstream 185171 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 229965 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 296962 365278 ~ 368624 (-) True G108366
TU135624 lncRNA upstream 25719 701479 ~ 701940 (-) False AMCG00006243
TU135626 lncRNA upstream 50304 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 95351 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 135975 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 163095 838855 ~ 874493 (-) False AMCG00006247
AMCG00006240 mRNA downstream 125650 539199 ~ 539936 (-) True AMCG00006240
AMCG00006241 mRNA downstream 132866 529054 ~ 532720 (-) False AMCG00006241
AMCG00006238 mRNA downstream 154393 508169 ~ 511193 (-) True AMCG00006238
AMCG00006232 mRNA downstream 267687 393832 ~ 397899 (-) True AMCG00006232
AMCG00006230 mRNA downstream 313272 344775 ~ 352314 (-) True AMCG00006230
AMCG00006239 mRNA upstream 824 676584 ~ 686559 (-) True AMCG00006239
AMCG00006243 mRNA upstream 24775 700535 ~ 701901 (-) True AMCG00006243
AMCG00006244 mRNA upstream 36072 711832 ~ 720393 (-) True AMCG00006244
AMCG00006245 mRNA upstream 50343 726103 ~ 748736 (-) True AMCG00006245
AMCG00006248 mRNA upstream 98714 774474 ~ 785585 (-) True AMCG00006248
TU135562 other downstream 119440 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 269607 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 325638 336736 ~ 339948 (-) True G108379
TU135453 other downstream 440445 221271 ~ 225141 (-) True G108324
TU135628 other upstream 55681 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 61500 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 450802 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 539465 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 661427 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile