RNA id: TU135624


Basic Information

Item Value
RNA id TU135624
length 343
lncRNA type sense_over
GC content 0.63
exon number 3
gene id AMCG00006243
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 700535 ~ 701940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtattgtactcgcctctctctctctgtctcctccagGAGGGGGTAGTGGTATTGGCCGGGCGGTTTGCCAACGTCTTGCCATCGAAGGCGCCTCAGTGGTGGTGGCAGATGTCAGCGAGGAGTCGGCCAATGAGACGCTGCGGAGCCTGGCGACGGGGGCAGGGGGTGCAGGGGGGCAGCGGCATGTGGCCCTCAGGGTGGACGTGTCCTTGACTGGCATACAGtgtgAGTATTTCCGGCCCCCCTGTGTGTGCGTCAGCGCGGCGGGCATCACTGCCGATGACTTCCTGCTGAGGATGGAGGAGAGACACTTCGACAGGGTCACTCAGGTCAACCTCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135606 lncRNA downstream 50653 585542 ~ 650826 (-) False G108427
TU135557 lncRNA downstream 139064 503803 ~ 562415 (-) True AMCG00006241
TU135561 lncRNA downstream 221064 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 265858 435401 ~ 435621 (-) True G108397
TU135507 lncRNA downstream 332855 365278 ~ 368624 (-) True G108366
TU135626 lncRNA upstream 24124 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 69171 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 109795 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 136915 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA upstream 140384 842324 ~ 874493 (-) True AMCG00006247
AMCG00006239 mRNA downstream 14920 676584 ~ 686559 (-) True AMCG00006239
AMCG00006242 mRNA downstream 25719 665586 ~ 675760 (-) True AMCG00006242
AMCG00006240 mRNA downstream 161543 539199 ~ 539936 (-) True AMCG00006240
AMCG00006241 mRNA downstream 168759 529054 ~ 532720 (-) False AMCG00006241
AMCG00006238 mRNA downstream 190286 508169 ~ 511193 (-) True AMCG00006238
AMCG00006244 mRNA upstream 9892 711832 ~ 720393 (-) True AMCG00006244
AMCG00006245 mRNA upstream 24163 726103 ~ 748736 (-) True AMCG00006245
AMCG00006248 mRNA upstream 72534 774474 ~ 785585 (-) True AMCG00006248
AMCG00006247 mRNA upstream 167416 869356 ~ 874494 (-) False AMCG00006247
AMCG00006255 mRNA upstream 195038 896978 ~ 900845 (-) True AMCG00006255
TU135562 other downstream 155333 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 305500 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 361531 336736 ~ 339948 (-) True G108379
TU135453 other downstream 476338 221271 ~ 225141 (-) True G108324
TU135628 other upstream 29501 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 35320 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 424622 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 513285 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 635247 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile