RNA id: AMCG00006244


Basic Information

Item Value
RNA id AMCG00006244
length 1053
RNA type mRNA
GC content 0.66
exon number 12
gene id AMCG00006244
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 711832 ~ 720393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCCCGCGGGGAGCGTGGAGAGAAGGGAGAGGCGGGACAGCCGGGAGCAGCCGGCCCGGCAGGAGGGAAGGGGCCGGTTGGAGACGATGGGCCCAAAGGAAACCCTggcCCAGTTGGTTTTCCTGGTGACCCCGGACCCCCTGGTGAACAAGGTCCCAGAgGTCAAGATGGAgcgaagggagagagaggagaggatggAGAACAGGGACAAGCGggttcTCCAGGACCCACCGGTGAAGCTGGTCCCCCAGGACCCCCTGGAAAGAGGgGTCCTGCTGGAACGAGAGGGTCCTCCAGGGCTGCCGGGGCTGCGCGGAGACCCGGGTTCGAAGGGAGAGAAGGGACACCCTGGTCTGATCGGCCTGATTGGACCTACTGGGGAGCAGGGCGAGAAGGGCGACAGGGGCCTGCCGGGGCCACAGGGCAACACCGGGCCCAAGGGAGACACCggTTTCGCTGGATCCACTGGGCCCCTGGGCCCCTCTGGCCCCCCTGGCCTGCCTggtccTCCTGGTCTTAAAGGTGCTAAGGGAGCTACGggTTCTGCTGGTCCCAAAGGAGAGAAAGGTGTGCAGGGACCTCCTGGGCCTCCTggtccTCCAGGTGAGGCGATCCAGCCGCTGCCCTTCCAGATGCCCAAGAAGTCGAAGCGCTCCATCGACGCCAGTCAGTTCGAGGAGGCGGAGTCCCGGGCTGAGACGCAGGCCGATTGGGCGTCGGACTGGTTCTCGTATGTGGACAACGAGGGCGGGCCGGTGGGTGTGGTCCAGATGACGTTCCTGCGGCTCCTGAGCGCCTCGGCGCGCCAGACCTTCACCTACAGCTGCCACCGCTCCATCGCCTGGCAACAGCACAGCGCCCCCGGCGACTACTCGCGCGCCCTGCGCTTCCTGGGCGCCAACGAGGAGGAGCTGAGCCACGACACCAGCGCCTACGTCAAGGCCCTGAGCGACGGCTGCTCTctccccctgctggaTGTGCAGGTCTCAGACTTTGGGGAACAATACCAGAAATTCGGCTTCGAACTGGGACCTGTCTGTTTCCTGGGCTga

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135624 lncRNA downstream 9892 701479 ~ 701940 (-) False AMCG00006243
TU135606 lncRNA downstream 61006 585542 ~ 650826 (-) False G108427
TU135557 lncRNA downstream 149417 503803 ~ 562415 (-) True AMCG00006241
TU135561 lncRNA downstream 231417 479582 ~ 480415 (-) False AMCG00006241
TU135552 lncRNA downstream 276211 435401 ~ 435621 (-) True G108397
TU135626 lncRNA upstream 5671 726064 ~ 730186 (-) False AMCG00006245
TU135635 lncRNA upstream 50718 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 91342 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 118462 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA upstream 121931 842324 ~ 874493 (-) True AMCG00006247
AMCG00006243 mRNA downstream 9931 700535 ~ 701901 (-) True AMCG00006243
AMCG00006239 mRNA downstream 25273 676584 ~ 686559 (-) True AMCG00006239
AMCG00006242 mRNA downstream 36072 665586 ~ 675760 (-) True AMCG00006242
AMCG00006240 mRNA downstream 171896 539199 ~ 539936 (-) True AMCG00006240
AMCG00006241 mRNA downstream 179112 529054 ~ 532720 (-) False AMCG00006241
AMCG00006245 mRNA upstream 5710 726103 ~ 748736 (-) True AMCG00006245
AMCG00006248 mRNA upstream 54081 774474 ~ 785585 (-) True AMCG00006248
AMCG00006247 mRNA upstream 148963 869356 ~ 874494 (-) False AMCG00006247
AMCG00006255 mRNA upstream 176585 896978 ~ 900845 (-) True AMCG00006255
AMCG00006259 mRNA upstream 322469 1042862 ~ 1047510 (-) True AMCG00006259
TU135562 other downstream 165686 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 315853 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 371884 336736 ~ 339948 (-) True G108379
TU135453 other downstream 486691 221271 ~ 225141 (-) True G108324
TU135628 other upstream 11048 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 16867 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 406169 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 494832 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 616794 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile