RNA id: TU135626


Basic Information

Item Value
RNA id TU135626
length 615
lncRNA type sense_over
GC content 0.65
exon number 9
gene id AMCG00006245
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 726064 ~ 748736 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGTAAACTGGGTGTTCCTGGACTGCCTGGATATCCTGGAAGACAAGGACCCAAGggaTCCCTCGGTTTCCCAGGATTCCCCGGTACAAATGGCGAGAAGGGAGCGAGGggtTTGATTGGCAAGTCTGGGCCCAGAGGACAGAGAGGCCCCAcgGGTCCCAGAGGTCAGAGAGGCCCCCGAGGAGCTACAGGGAAACCAGGAGCCAAGGGAACGTCAGGCAGCGATGGCCCCGCCGGCCCcccaggagagagaggaTTGCCTGGACCTCAAGGTGCTAACGGATTCCCAGGACCAAAGGGACCTCCTGGCCCCCCAGGAAAAGACGGACTGCCCGGACACCCAGGACAGAGAGGAGAAGTTGGTTTCCAAGGGAAGACTGGCCCCCCTGGACCTCCAGGTGTAGTGGGACCCCAGggtccATCAGGAGAGAGTGGCCCTATGGGTGAGAGGGGTCACCCCGGGCCCCCTGGCCCCCCCGGGGAGCAGGGCCTGCCTGGAGCCTCAGGCAAGGAGGGAACCAAGGGCGACCCTGGGCCACAAGGGGGTCCTGGCAAGGATGGTCCCCCCGGACTGAGAGGCTTCCCTGGAGAGAGAGGACTGCCTGGAACCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135605 lncRNA downstream 13300 645365 ~ 712764 (-) True G108427
TU135624 lncRNA downstream 24124 701479 ~ 701940 (-) False AMCG00006243
TU135606 lncRNA downstream 75238 585542 ~ 650826 (-) False G108427
TU135557 lncRNA downstream 163649 503803 ~ 562415 (-) True AMCG00006241
TU135561 lncRNA downstream 245649 479582 ~ 480415 (-) False AMCG00006241
TU135635 lncRNA upstream 40925 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 81549 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 108669 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA upstream 112138 842324 ~ 874493 (-) True AMCG00006247
TU135684 lncRNA upstream 122098 852284 ~ 855672 (-) True G108478
AMCG00006244 mRNA downstream 5671 711832 ~ 720393 (-) True AMCG00006244
AMCG00006243 mRNA downstream 24163 700535 ~ 701901 (-) True AMCG00006243
AMCG00006239 mRNA downstream 39505 676584 ~ 686559 (-) True AMCG00006239
AMCG00006242 mRNA downstream 50304 665586 ~ 675760 (-) True AMCG00006242
AMCG00006240 mRNA downstream 186128 539199 ~ 539936 (-) True AMCG00006240
AMCG00006248 mRNA upstream 44288 774474 ~ 785585 (-) True AMCG00006248
AMCG00006247 mRNA upstream 139170 869356 ~ 874494 (-) False AMCG00006247
AMCG00006255 mRNA upstream 166792 896978 ~ 900845 (-) True AMCG00006255
AMCG00006259 mRNA upstream 312676 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006260 mRNA upstream 317992 1048178 ~ 1049728 (-) True AMCG00006260
TU135562 other downstream 179918 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 330085 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 386116 336736 ~ 339948 (-) True G108379
TU135453 other downstream 500923 221271 ~ 225141 (-) True G108324
TU135628 other upstream 1255 731441 ~ 735410 (-) False AMCG00006245
TU135631 other upstream 7074 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 396376 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 485039 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 607001 1337187 ~ 1341445 (-) True AMCG00006277

Expression Profile