RNA id: TU135628


Basic Information

Item Value
RNA id TU135628
length 423
RNA type TUCP
GC content 0.57
exon number 7
gene id AMCG00006245
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 726064 ~ 748736 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggTATGTCAGAATGTTGTTCATCAATACTGTTCTGTTATCAGTGacaaatctctctctttctctctctcagggaccCCGTGGTCTGTTGGGACCCAAAGGTCCTCCTGGAGTCCCTGGATCTCCTggagtGCGAGGAAGTGATGGGCCTCTGGGTCCTAAAGGAAATCTTggtccACAAGGAGAGCCCGGTCCCCCAGGACAACAAGGAACACCAGGAACTCAGgGATCATCAGGACCTCAAGGTGCAATGGGACCCCCAGGAGAGAAGggtCCCAGAGGGAAGCCTGGGCTGCCAGGGATGTCTGGTGCTGACGGCCCTCCAggtcaCCCAGGAAAGGAGGGTCCTGCCGGCACTAAAGGAAATCAGggTCCCAACGGCCCCCAGGGTCCTATTGGCTATCCTGGTCCTCGCGGAGTTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135626 lncRNA downstream 1255 726064 ~ 730186 (-) False AMCG00006245
TU135605 lncRNA downstream 18677 645365 ~ 712764 (-) True G108427
TU135624 lncRNA downstream 29501 701479 ~ 701940 (-) False AMCG00006243
TU135606 lncRNA downstream 80615 585542 ~ 650826 (-) False G108427
TU135557 lncRNA downstream 169026 503803 ~ 562415 (-) True AMCG00006241
TU135635 lncRNA upstream 35701 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 76325 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 103445 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA upstream 106914 842324 ~ 874493 (-) True AMCG00006247
TU135684 lncRNA upstream 116874 852284 ~ 855672 (-) True G108478
AMCG00006244 mRNA downstream 11048 711832 ~ 720393 (-) True AMCG00006244
AMCG00006243 mRNA downstream 29540 700535 ~ 701901 (-) True AMCG00006243
AMCG00006239 mRNA downstream 44882 676584 ~ 686559 (-) True AMCG00006239
AMCG00006242 mRNA downstream 55681 665586 ~ 675760 (-) True AMCG00006242
AMCG00006240 mRNA downstream 191505 539199 ~ 539936 (-) True AMCG00006240
AMCG00006248 mRNA upstream 39064 774474 ~ 785585 (-) True AMCG00006248
AMCG00006247 mRNA upstream 133946 869356 ~ 874494 (-) False AMCG00006247
AMCG00006255 mRNA upstream 161568 896978 ~ 900845 (-) True AMCG00006255
AMCG00006259 mRNA upstream 307452 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006260 mRNA upstream 312768 1048178 ~ 1049728 (-) True AMCG00006260
TU135562 other downstream 185295 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 335462 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 391493 336736 ~ 339948 (-) True G108379
TU135453 other downstream 506300 221271 ~ 225141 (-) True G108324
TU135631 other upstream 1850 737260 ~ 740289 (-) False AMCG00006245
TU136000 other upstream 391152 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 479815 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 601777 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 609106 1344516 ~ 1623374 (-) False AMCG00006292

Expression Profile