RNA id: TU135631


Basic Information

Item Value
RNA id TU135631
length 665
RNA type TUCP
GC content 0.65
exon number 10
gene id AMCG00006245
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 726064 ~ 748736 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTATGTGTcgcgtgtcagtgtgtctacTGACTCTGCGTGTTCCTGGCTACATGTGTGTTTCCCTCAGGCCTCGGTCAGAGCACTGaaaggagagaagggagagCCCGCTGTCCTCGAGCCCgGTATGCTGATTGAAGGACCCCCAGGACCAGAAGGCCCAGCAggtATGCCTGGCCCCTCTggcccccccggcccccctGGCTCCACAGGAGACCCCGGTGAGAGGGGCCTGCCCGGTCGCGCTGGTCTGCCTGGAGCTGACGGACTCCCTGGACCCCCTGGTACCTCCGTCATGCTGcctTTCCGGTTTGGCAGCAGTGGAGGTGATAAGGGCCCTGTGGTCTCGGCTCAGGAGGCTCATGCCCAGGCCATCATGGCACAGGCCAGGATGGCGCTGAAAGGCCCCCCTGGACCAATGGGATTCACTGGCCGGCCAGGACCCTTGGGCACCCCCGGCAGCCCTGGGCTGAAAGGAGAAAGTGGTGACCACGGCCCTCAGggCCCCAGAGGACCTCAGGGGATGTCTGGTCCCCCAGGGAAGGCAGGCCGCAGGggTCGTGCTGGAGCTGATGGTGCGAGAGGTATGCCAGGAGAGCCTGGGACCAAGggtgatCGAGGGTTCGACGGCCTTCCCGGTCTGCCAGGAGACAAGGGTCACAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135626 lncRNA downstream 7074 726064 ~ 730186 (-) False AMCG00006245
TU135605 lncRNA downstream 24496 645365 ~ 712764 (-) True G108427
TU135624 lncRNA downstream 35320 701479 ~ 701940 (-) False AMCG00006243
TU135606 lncRNA downstream 86434 585542 ~ 650826 (-) False G108427
TU135557 lncRNA downstream 174845 503803 ~ 562415 (-) True AMCG00006241
TU135635 lncRNA upstream 30822 771111 ~ 771337 (-) True G108451
TU135648 lncRNA upstream 71446 811735 ~ 811963 (-) True G108461
TU135676 lncRNA upstream 98566 838855 ~ 874493 (-) False AMCG00006247
TU135675 lncRNA upstream 102035 842324 ~ 874493 (-) True AMCG00006247
TU135684 lncRNA upstream 111995 852284 ~ 855672 (-) True G108478
AMCG00006244 mRNA downstream 16867 711832 ~ 720393 (-) True AMCG00006244
AMCG00006243 mRNA downstream 35359 700535 ~ 701901 (-) True AMCG00006243
AMCG00006239 mRNA downstream 50701 676584 ~ 686559 (-) True AMCG00006239
AMCG00006242 mRNA downstream 61500 665586 ~ 675760 (-) True AMCG00006242
AMCG00006240 mRNA downstream 197324 539199 ~ 539936 (-) True AMCG00006240
AMCG00006248 mRNA upstream 34185 774474 ~ 785585 (-) True AMCG00006248
AMCG00006247 mRNA upstream 129067 869356 ~ 874494 (-) False AMCG00006247
AMCG00006255 mRNA upstream 156689 896978 ~ 900845 (-) True AMCG00006255
AMCG00006259 mRNA upstream 302573 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006260 mRNA upstream 307889 1048178 ~ 1049728 (-) True AMCG00006260
TU135628 other downstream 1850 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 191114 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 341281 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 397312 336736 ~ 339948 (-) True G108379
TU135453 other downstream 512119 221271 ~ 225141 (-) True G108324
TU136000 other upstream 386273 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 474936 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 596898 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 604227 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 610196 1350485 ~ 1352941 (-) False G108755

Expression Profile