RNA id: AMCG00006249


Basic Information

Item Value
RNA id AMCG00006249
length 3120
RNA type mRNA
GC content 0.56
exon number 17
gene id AMCG00006249
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 932159 ~ 946648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTGGTCAGCGTCAATGTGCGCCGAGGCGGAACTGACTTTTGAGGCCCGTAAACAATAACAGTCGCGGCTCTAAATAGTAATATTTTCACATATATGGTGTTATTCGGCCTCCGAACGGGTTCTTAAATTCATACTTTGGCAACGTTTCTCCAAGCTTGCAGGCCGGCTCTCAGTCTCgcctgtttattttaatctggggtttcctggtttgtttttttcaagagGAATCGTCGGAGGCGGATCTATGGCGACCGACCTACTGTCTGAGCTGGACAACCGCTTCTTCGCCGATAACCTGCTGACCAGCGAGGACTGggATGCCTGTCTGTACCAGTGTGAGAGtatggaggagggggaggacaGTGACCACGTTTCTGGCCTGAAATACCACAGTCCGTTTGACAGTGACCTCATACTGACCCTTGACCCCGACAATCGCACATCACCATGGAAGCACATGAGCAATGACGTCCTGACAGCAGACAGTCCAGCCCTGGAAGAGGAGACGGCCACATCTCAGCCCCTGCCTGTGGACATGTTGTTCCAGGTGGTGAAGTCAGAGCCTCTGTCTCCTGCCTCCTCTCTTGCCTCTGACTcgtctctctcctccctgccGGACTCACAGCAGgtgctGGAGGTGACAGTGAAGACAgagaacccccccacccctccttaTATGTTCGGGGACATCTTGTCCCCCCCACTGGGGTCCCTGCACCCCCCTGCCACACCACcgacacagcaacaacaacagcagcatcaacagcaacaacagcaacacaaagcacagactGTACCGAGCAACAGCCCAATCAGCGTACACGCTGCTGCAACAGTGCTCACACCCCCCTGTGTGAAGGTCAGCAGTATCGTGAGCAGTAAGCCCCCCCTGCAGCCTCGCCCGCTGTGTGTGTCAGCGCTGCCCCCCCCTGCACAGAGCCCCGCCCCCACCAGCACGATCGTCCTGCACAACCGGCCCGtggtgctctctcagtcagtgtgtctgggTTCTGCTCCGGCGCTGGTGAAAGTGGAGCCGGTttctcccagcatgcctcaCTGCAGCAGCCCCAccatcccccccaccaccaagCCACTCGTCCCAGCATCCCCTCTACCTGGGGTGCCCAGCGCTGGGGACATTGACATGAAGGTGCTGAAACGGCAGCAGCGCATGATCAAGAACAGGGAGTCGGCGTGCCAGTCGCGCCGCAAGAAGAAGGAGTACCTGCAGAGCCTGGAGACACAGCTGCACGACCTGCGCCGTGAGAACGAGCGTCTGCGCAGAGAAAACCAGGCACTGCGAGACCGGCTGGGCCAGCCCTGCACCTGCGCACAGgagtcCCAGCTCTCCTCCAGCAGAAGGAACCTCCTGGAGTTCCACCAGAAACAGGAAGTAGTGGAGAAGGGGGCGGGGCccacagggagggagagtgCCAAGGCGAGAGCACAGATCACACTGccagaggagaggaaagagaagagaggggcgaaggaggaggaggagggagagacgACTGAAACCTACCAGTTTAGgaaTGTGAGCGGGGTGTTCAGTGACGTGAAAGACCTAGTGTTGAGGGACATCGATCGCCTCTTCACCTCCTCCGACTGCCGCCAGTTCAACCGCTCGGAGTCTCTGCGgctGGCTGATGAACTGCGAGGCTGGGTCCACCGACACCAGATCGACAGGAAGAAATCGGGAGAGAAGCCACAGAGAGTCAAGAAGGCCAAGATTGCACAGaAGGCTCAGCAGAGGAAGCTGAATTTCTCACGGTACCTGCCTGTGCACTCCCCCCGCTCCATCGACAGtcagttGCAGGTGTTCCCCGGGGCTGAGCTGAGTTACACTGATTTCCTGGACGCTATCGACCGCAGAGAAGACACCTTCTATGTGGTCTCCTTCAGacggGACCACCTGCTGCTGCCGGCCATCAGCCACAACAAGACCACCCGACCCAAGATGTCCCTGGTCATGCCGGCCATGTCCGTCAACGAGTCGGTGTACAACGCGTCCCAGGGCTACGAGGTGATGATGCAGGTGGACTGTGAGGTCATGGACACGCGCATCATTCAGATCAAGTCCTCGGCCGTCCCGCCCTCGCTCCGAGACCCCCCCGCCGGCCCCCCGCACGGCCCCCACCACCCGCACGGCAACACCACCACCCTGCGCGGCCGGCACGAACAGGGGGCCGCCCCCCCCCGGCCCCGCTCGccgaggagaggagagggggacgagcgagggagggagaggctGCTGCATTAGCcagcagaggggtggggggtgagaaagagagagagaggaggggatgaatggaaaggaacaagtgagtgagtgagtgtgtgagtgtgtgtgtctgtgagactGAGAGAAGGCGGTTTGTGAAGGAGAGactgctgttctctgctctctctctctgttctgttgtatattttgatgctatttttggttttgtattggTTTCTGTCCATTCCTGTGACTGGTCTCTGTGCACCGGACAGGACAGGCACAGCATTTCAATTATCgttaataataattcttattgAGGTGCAGTTCCCCGGCTGTGCCTGTGCAGAGTGCGGGGGCGCTgtctctcattattattattattattattattattattattattacacacaaCTAGGCTCTGGACTCACTTACTGCAATACACATCTACTACTAATGACACCATCACAGCAGTCGTATAGTGTGtacagtaataatgataatgataccCACAGTCAGAAGGGCCACAGCCTGGCCAGTCTGTTTAAAGGGACGTCACTCTGACTGATGCTGTTCTTGTAAATAAAAACCACTCGATCCAGGCCAGTCcctccagcccagcccagcccatgTCTGATATTCCTGCCCTTTTGTGCCACTGCCATCCGCTGTGTGTATGAACCCTCCGcagggcagagacagagagagggatttGTGGGtttgtctgtctatatatacCTACACCACCTCCCTCCTCCctttctctatttctctctccccctctctctttcactgaGGAAGGGAAACTTTTGCAATCattgtgtaatatttaatttttattttgtagatttatttaatatttgtcttttgccaataaaaataatgaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135441 lncRNA upstream 141326 789976 ~ 790833 (+) True G108322
TU135422 lncRNA upstream 149684 782025 ~ 782475 (+) True G108308
TU135434 lncRNA upstream 158120 773659 ~ 774039 (+) True G108318
TU135429 lncRNA upstream 201973 727877 ~ 730186 (+) True G108314
TU135427 lncRNA upstream 223231 708057 ~ 708928 (+) True G108312
TU135742 lncRNA downstream 120388 1067036 ~ 1067725 (+) True G108513
TU135744 lncRNA downstream 123679 1070327 ~ 1070771 (+) True G108515
TU135746 lncRNA downstream 124646 1071294 ~ 1071772 (+) True G108516
TU135751 lncRNA downstream 216216 1162864 ~ 1193441 (+) True G108519
TU135752 lncRNA downstream 216216 1162864 ~ 1193441 (+) False G108519
AMCG00006251 mRNA upstream 3073 924614 ~ 929086 (+) True AMCG00006251
AMCG00006250 mRNA upstream 23353 896978 ~ 908806 (+) True AMCG00006250
AMCG00006252 mRNA upstream 36715 889078 ~ 895444 (+) True AMCG00006252
AMCG00006246 mRNA upstream 76439 846614 ~ 855720 (+) True AMCG00006246
AMCG00006236 mRNA upstream 281336 644718 ~ 650823 (+) True AMCG00006236
AMCG00006253 mRNA downstream 4274 950922 ~ 959903 (+) True AMCG00006253
AMCG00006254 mRNA downstream 28010 974658 ~ 982685 (+) True AMCG00006254
AMCG00006256 mRNA downstream 39689 986337 ~ 1003871 (+) True AMCG00006256
AMCG00006257 mRNA downstream 79555 1026203 ~ 1039280 (+) True AMCG00006257
AMCG00006261 mRNA downstream 130645 1077293 ~ 1085987 (+) True AMCG00006261
TU135656 other upstream 83387 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 141097 774809 ~ 791062 (+) False G108319
TU135437 other upstream 141097 774809 ~ 791062 (+) True G108319
TU135365 other upstream 498254 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 752757 177138 ~ 179402 (+) True AMCG00006205
TU135722 other downstream 39225 985873 ~ 990822 (+) False AMCG00006256
TU135810 other downstream 334053 1280701 ~ 1286052 (+) True AMCG00006276
TU135836 other downstream 403735 1350383 ~ 1429987 (+) True G108585
TU135921 other downstream 789284 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 861909 1808557 ~ 1812675 (+) False G108626

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075877 True 1680 mRNA 0.55 11 NW_003335796.1 4431 ~ 10422 (-)
grasscarp (Ctenopharyngodon idella) CI01157258_00001661_00002757.mRNA True 2086 mRNA 0.37 4 CI01157258 171 ~ 2757 (-)