RNA id: TU135722


Basic Information

Item Value
RNA id TU135722
length 1481
RNA type TUCP
GC content 0.56
exon number 9
gene id AMCG00006256
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 985873 ~ 1003871 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGatttacacaatacatacacacacacacacacacacacacacacatacacactgacacggACTGACCCACACACATTGATACAGACTGACTACTAATCTGTTTGATCtgctctttttgtttctttagagACAACAAACACTgtcctagagagagagagggggaggggggcaaaaattaatttaaaactaacaTTACGACAGAGacagataaagagagagagagagagagagagagagagagagagagagagattaatacaGGCATTGGTCAACCAATTGATTGGACAGTACAGTTATATTGTACCGCACTGAGAGGgacgcacacagagagagagagacagagagtccATGGAGACAGACTCCAGCTAAGtggacactgcactgagagacgcacacagagacagaaactaatagacacacacacagacacacacacacacacacacgctgagtCGGGGGGTCATGGTGACTGCTctgtgtctgctgctgctgggctgTGCTGCCAGGACTGTGTGCGGAGAGGAGTTCCTGGTGCTGGCCCCCAATGTGTTCCATGTGGGTTTGCCAGAGAAGGTGTGGGTGCAGGTGGCCCCCGATGCCTCCCGGCGCCAGGTGTCGGTGTACCTGGAGGACGAGGTGACGCAGAGGAGGGTGACCGAGACGAAGGAGATATCGCTGGGGGGCGGCACTGCCATTCAGAGTGTCACTGTGGAGGACGTCTGACCTGCAGTTCGGCTCCGTGACGCCCTACCTGCTGCTGGTCACTGAGATCCAGCCCAGGGACAGGAAGGTGTGCAGGGTGCTGCTGTCTCAGGACCGCGGACACATCTTCATTCAGACGGACCAGCCCATCTACACCCCCACACAGACAGaacGCGGGGGGGAACCGGGTGAAGGTGGACACAGTGACGAGTAACAGGGACGGCCTGTACTACAGCAAAGTGCACATCCCCGACGTCTCACAgccagGCGTGTGGCGAATCACAGCCCAGTACAGCGGAGCTCAGAACAGGACAGCGAGCCGCGAGTTTGAGGTGAAGAAGTTTGtgttgccCAGCTTCGAAGTGTCCATCAAACCAGGTCGGCTCTTCTACAAGGTAGACGAGAAGGACTTCAGCTTCCGAGTCATGGCCCAgttCTCCTATGGTCAGCCAGTCCAGGGCTCGGCTCATGTTCGTTTCGCTGTGACTGATGAGTCTGGAGAGAACACCTTCATCAGGGGCCTTGAGATGGAGAGCAGCctGGTGAATGGGGAGGCCCAGTTCAATGTGTCCAGCGCGGAGGTCAGTGAGCTGCTGCAGCGGCCGCTGGCGGAGCTCAGCGGAGACTCTCTGTACATCGCCACCACCGTCATCGAGACCGCCaGTGGGGAGGTGCAGGAGGCTGATGTCAAGGTGCCTCTGGTCTCCACTCAGTTCTCAGTGGATCTCTCTCAGACGCGCCGGCACTATGTTCCCGGGGGCCCCCTCCGCATCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135710 lncRNA upstream 52048 933515 ~ 933825 (+) True G108496
TU135441 lncRNA upstream 195040 789976 ~ 790833 (+) True G108322
TU135422 lncRNA upstream 203398 782025 ~ 782475 (+) True G108308
TU135434 lncRNA upstream 211834 773659 ~ 774039 (+) True G108318
TU135429 lncRNA upstream 255687 727877 ~ 730186 (+) True G108314
TU135742 lncRNA downstream 76214 1067036 ~ 1067725 (+) True G108513
TU135744 lncRNA downstream 79505 1070327 ~ 1070771 (+) True G108515
TU135746 lncRNA downstream 80472 1071294 ~ 1071772 (+) True G108516
TU135751 lncRNA downstream 172042 1162864 ~ 1193441 (+) True G108519
TU135752 lncRNA downstream 172042 1162864 ~ 1193441 (+) False G108519
AMCG00006254 mRNA upstream 3188 974658 ~ 982685 (+) True AMCG00006254
AMCG00006253 mRNA upstream 25970 950922 ~ 959903 (+) True AMCG00006253
AMCG00006249 mRNA upstream 39225 932159 ~ 946648 (+) True AMCG00006249
AMCG00006251 mRNA upstream 56787 924614 ~ 929086 (+) True AMCG00006251
AMCG00006250 mRNA upstream 77067 896978 ~ 908806 (+) True AMCG00006250
AMCG00006257 mRNA downstream 35381 1026203 ~ 1039280 (+) True AMCG00006257
AMCG00006261 mRNA downstream 86471 1077293 ~ 1085987 (+) True AMCG00006261
AMCG00006262 mRNA downstream 98769 1089591 ~ 1098771 (+) True AMCG00006262
AMCG00006264 mRNA downstream 111958 1102780 ~ 1107716 (+) True AMCG00006264
AMCG00006263 mRNA downstream 152955 1143777 ~ 1147913 (+) True AMCG00006263
TU135656 other upstream 137101 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 194811 774809 ~ 791062 (+) False G108319
TU135437 other upstream 194811 774809 ~ 791062 (+) True G108319
TU135365 other upstream 551968 429763 ~ 433905 (+) True AMCG00006231
TU135311 other upstream 806471 177138 ~ 179402 (+) True AMCG00006205
TU135810 other downstream 289879 1280701 ~ 1286052 (+) True AMCG00006276
TU135836 other downstream 359561 1350383 ~ 1429987 (+) True G108585
TU135921 other downstream 745110 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 817735 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 2370532 3361354 ~ 3365565 (+) False G109309

Expression Profile