RNA id: AMCG00006260


Basic Information

Item Value
RNA id AMCG00006260
length 534
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00006260
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1048178 ~ 1049728 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggagcCTCACTCTGTGTCAGTGAGTGGTCAGCAGTCCAGTGTGTCTCTGACCTCTCTGACCCCAGGGTCTACCTACAAGtcCCTGACCCACCCTCTGACCTGCGTGTCGTCAATGTCACGGACTCCAGGGCCCTGTTGCTGTGGCGCCCTGCCCTGGTCAATGTTGACCGTTACGTCATCGTTTACAGAGCCCAGGATGagcctGAGGTGTCAGTCAGTAGTTCGGGTAACTCAGTGGAGCTGCAGCTGAAGGGTCTGCAGGGAGAGACATTGTACAGCGTCACGGTGACCAGCCTCAGGGGCAGAGAGCACAGCCCCCCCGCCTCCACCTCCTTCACCACGGCATCTGggGTGGTGGCCAGAGGGGAGGAGCCCCGCGACCTGACAGCCAATCAGGTGAAGCCACGGTCTGCCATGCTGTCGTGGAAACCGCCACATACCGCGGTATCGGGGTACTGGCTGACCTATCAGACGGACAGACAGGAAACACAggtgaaagagagacagagacagagaaagagagagagatattgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135942 lncRNA downstream 89500 953292 ~ 958678 (-) True G108664
TU135930 lncRNA downstream 114353 933515 ~ 933825 (-) True G108655
TU135702 lncRNA downstream 139150 907890 ~ 909028 (-) True G108491
TU135693 lncRNA downstream 158376 889073 ~ 889802 (-) True G108484
TU135674 lncRNA downstream 173685 869277 ~ 874493 (-) False AMCG00006247
TU135975 lncRNA upstream 43136 1092864 ~ 1101292 (-) False G108689
TU135974 lncRNA upstream 44996 1094724 ~ 1098717 (-) True G108689
TU135995 lncRNA upstream 59923 1109651 ~ 1119698 (-) True G108705
TU136001 lncRNA upstream 85173 1134901 ~ 1137952 (-) False AMCG00006266
TU136018 lncRNA upstream 130854 1180582 ~ 1201681 (-) False G108717
AMCG00006259 mRNA downstream 668 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006255 mRNA downstream 147333 896978 ~ 900845 (-) True AMCG00006255
AMCG00006247 mRNA downstream 173684 869356 ~ 874494 (-) False AMCG00006247
AMCG00006248 mRNA downstream 262593 774474 ~ 785585 (-) True AMCG00006248
AMCG00006245 mRNA downstream 299442 726103 ~ 748736 (-) True AMCG00006245
AMCG00006258 mRNA upstream 18326 1068054 ~ 1073294 (-) True AMCG00006258
AMCG00006266 mRNA upstream 85206 1134934 ~ 1137945 (-) True AMCG00006266
AMCG00006265 mRNA upstream 106999 1156727 ~ 1160200 (-) True AMCG00006265
AMCG00006268 mRNA upstream 113572 1163300 ~ 1170846 (-) True AMCG00006268
AMCG00006267 mRNA upstream 121953 1171681 ~ 1179064 (-) True AMCG00006267
TU135631 other downstream 307889 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 312768 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 502032 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 652199 395424 ~ 395979 (-) False AMCG00006232
TU135530 other downstream 708230 336736 ~ 339948 (-) True G108379
TU136000 other upstream 76834 1126562 ~ 1134690 (-) True G108708
TU136027 other upstream 165497 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 287459 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 294788 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 300757 1350485 ~ 1352941 (-) False G108755

Expression Profile