RNA id: AMCG00006262


Basic Information

Item Value
RNA id AMCG00006262
length 3751
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00006262
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1089591 ~ 1098771 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagaaataCAACACAGGAGGAGGGGGTGACGACGAGTAAAATAGAAAAACGGGCGCCATcgttcattttttattgtttattatgaattattatgaAGTCAACCTGAACCATGTCACTCTACCTGCGAGCTGATGACGCCGCAGCGAAGACAGTCCTCTGATTGGTGGAGAACAGGCCTGGTTATGTGATTGACGGCTGTGTGATGCGCATGCGTGCTTCTCTGCATGTCAAGGCTTGCTGGAAGCTGGAGGAGGTGCAGATCGGCTGCCGAGATTTTAAATCggtttttaacatatttgatgTATTGTTGGGTGTAGAAACACGGTGCAGAAATGGATTTGCAGTGTCTGTGGCTGATCTGCTGCTGTGCCGTGGCCGTGGACAGCGAACGCCACTCTCTCCAGTACATCTACACTGCCATGTCCCACCCATCAGTGAGCAACCCGGAGTTCACTGCCATGGGCCTCCTTGACGACAACCAGATCGATTACTATGACAGTGCGAGCAAAATGAAGATCCCCAAACAGGACTGGATGAGGGAAAAGCTGCCTGCAGACTACTGGGAGAAAGGCACCCAGTCCCGCAGGAGCAAGGAGCAGTGGTTCAAGGTCAACGTGGGCATCCTGATGGACAGGATGAGGGACAATAGGACAGatctGCACATCCTCCAGTGGAGACACGGCTGTGAGATCAATTTCAGTGAAGACTCCAGCGTTAAGTTCATTCGTGGCTACGACCAGTACAGCTACGACGGCGCCGACTTCCTGTCCTTCGACGAGTCCAGATCTCAGTGGGTGGCGCCCGTCCCCCCGGCCGAGCCGACCAAACGCAAGTGGGACAACGAGCAGATCCTGAACCAGTACACCAAGGGCTATCTGGAGCGGGAGTGTGTGGACTGGCTCACCAAGTTCTATAAATACGCACAGAAGGACATAGAGAAGTTGTctccccCTGATGTCCACGTCTTTGCCAAGTTCTCTCTGAACCCTGGCCGTCTCGCGCTGTCTTGTCTGGCCACTGGATTCTACCCCAAGGATGTCCAAGTGGATCTGTTCAAACAGGATAAGATGCTGGGGGAGGCAGACGGGGTGCAGTCCAGTGGGGTCAGGTCCAACGGAGACGAGACCTACCAGCTGAGGAAGTGGCTGGAGATCCCCGAGTCTGACAAAGAGGGCTACAGCTGCAAGGTCCAGCACAGGAGTCTGACTACACCCATCATCAAGAAATGGGaGGGGGACGTGCTGGACTGCAACAGGAACTCTTGTTGTGGTGCTGCAGTTATTGGAGGCCTTATAGTTATGATGCTGGTTGTGTGTGCTGTAGCTGTGACTTTCGTCCTGTATAAGAAGAAAATTCTGGAGCACAATCCCGGGCAGCAGAATGGCACCTCAAATGGAAAAATCTACAATGGCAACGGCATGTCAGTGCAGAGCCCCCTGATATCTGGGAGCAATGGAAACCCCAAAGGCAATGGCATGTCAGTGGAGCAGCCCCTGATGTCTGTGCTCAACTGTGATGGTACTCCATCTTCAACCAATGGCAATGCTTTGAAAGACGCCCTCCCCCACCTTGCCATTGCGTAATCAGTCAGATCTTCCCTTAACAACGTCCCTCCAGGCCCTTCCTCACACCCCTCCCCTGCCCCTCCTGGAACCCCGGACCACACTCGAGAGATGCAGGTTCTGGGCTGTTACCAGGAGGCCGCAGTATCCAGACACACTCCGATAGGGACCGAAATGGATTGTTTTAAACGACAACACAGACGGGTAATACAGTCAGAGACTACAGgacatattttattacagtgaaGTAAAATGGGTTTAAACTGTTCTTGTACAGTACACACAGATTTTAAAGTCACAATATACAGGAcagatttgtttaatacatgaaaataattgGACAGTAAAGATTTAtagcaacaataacaaagatTCAAAGCCCAATCAGGCTTCAAGGCTTCAACAGAAACTACAGCACAGACTGTTTGGATATGTAAGAGACTATGATACAATGAAGATTAGattgaataaattacttaatgtacattacttaaaataagAGCTAAAATACTATGGAATTAAAATAGTGTATCAGTAACAGAAGATTATAAAAGATAAGTATTAATGTGTGAAGCAATAGAATCATATTTGAATGTGATCACATGAGTGAAAGTCAAACTCCTCCACATGGCTTATGGATACTAAAGTTCCCAAGCCGAATATGTTAAGAAAGATAGATTGTATATGTTGATGAatctttatttgtgtttctggtTTTTTGTAActattgtgtgttttacaaaATTGATATTTGACCTGTTGAAGTGGGCAGCTGAGAACAGGAGATATTTTGTTATATGTGTACTGTGCTCACTCGGCTGAGACACTTGTggcttttaattatatattgtcCTTTCACACCTATGGTTTGATGCGGATTGAACCGCGGTTGATTTCACTTTAATATAAACTCACgtttgattacattttcctgGTGTGAAACAAAGTGAACCTAAACCGAAAGAAgtctgtgtgcaagtgaactgGGTGTGAAAATGCCCGCAGTTTGTATTTGCACCTATGACAGGATAGCCAGGAATGGGTGGCTCTGAGTCAGGCTGCAGGTACACAAAACTAGacttttattaaagaaacacacaaaataaacaggcaGGAGgtccaaaacaaaagtgcacaAACCAAAATACACATGATGGCCACTGACTGCACTGTGAAACGAAGCAGTGCACCAAACCGATAACCTTCCTGCTTGGTAGGCTCTGTAAGGCTGAGGCCTCCTTTTATAGCAGGTGGCCGGGGTTGATTAACCAATTAGTGACAATCAACcccaaccacctgcagtccatgagatgttaaccccctccctgccacagcATCGAGGGCATTTCTCACCTGGTTCACATGCAATGCATGTGAGTTTTTCAGTTGAGGTTGGGTTTGTTTCACACCTGTGTGCAGCGGTTCGTTTCCAAGTGAACCACAATGCATTGTCTTTCACATTCCCAGAGTAACTGGCTCGAGCAGtgagtttcctttcaaatgagCCAAGAGCAGCGTTCCAGGGTCTCGGCCCGTTTGGTTTGATCTGCATCCTGGTGCGTTTGTCAGTATCGGAGGTTTCACACACAGCCCCAAACTGACCTCATCGAACCGTAGTGTGAATGGacccttacatttttttctgttattttaaatgtatatatttgaaggTTTTCCATTTATCTTGCATTAGGGCTCAGGTTTCTAGTATTCTACTATGTGCCTGAAAGCTCTGAAAGCACTTTTGATAACTTCATTCACCTCGAGAGTGATAATCTAATTCTATTGCAATTAATTTCTACCTCTGTCACAAATGGTGGAgcgcagagagagggggggagaaatGATCTAAGCTGGCTTGTAGAATGAGCTACAGGAAGTGAGTGCGATGCTCCACCTGGAAACTGGTGAAGAGCAGAAAGgcatctctctccttcccacACTCCCTGtcttttttcctgtttcatGTTGAACTGCAGTGTCCCCAAGGGTAAAACACATCTTCAGTGGAAGTGAAGTGTTCAGTTCTGCAGGGGTCAGTGACAGTTTAATTGGGCTGgtcattattgtgttttatcatTAATAAACCTATTACTATAGAGCTCCTGTACCTGAGAGTTTATTTGGTGTGCCTGTGTTTGGCTCAGTGAGTCCATGATTGTCTCtgtatgagtgtgagtgtgaccAGG

Function

GO: NA

KEGG:

id description
K06751 MHC1; MHC class I antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135746 lncRNA upstream 17819 1071294 ~ 1071772 (+) True G108516
TU135744 lncRNA upstream 18820 1070327 ~ 1070771 (+) True G108515
TU135742 lncRNA upstream 21866 1067036 ~ 1067725 (+) True G108513
TU135710 lncRNA upstream 155766 933515 ~ 933825 (+) True G108496
TU135441 lncRNA upstream 298758 789976 ~ 790833 (+) True G108322
TU135751 lncRNA downstream 64093 1162864 ~ 1193441 (+) True G108519
TU135752 lncRNA downstream 64093 1162864 ~ 1193441 (+) False G108519
TU135754 lncRNA downstream 64093 1162864 ~ 1193441 (+) False G108519
TU135776 lncRNA downstream 102523 1201294 ~ 1201681 (+) True G108540
TU135793 lncRNA downstream 119108 1217879 ~ 1221424 (+) True G108555
AMCG00006261 mRNA upstream 3604 1077293 ~ 1085987 (+) True AMCG00006261
AMCG00006257 mRNA upstream 50311 1026203 ~ 1039280 (+) True AMCG00006257
AMCG00006256 mRNA upstream 85720 986337 ~ 1003871 (+) True AMCG00006256
AMCG00006254 mRNA upstream 106906 974658 ~ 982685 (+) True AMCG00006254
AMCG00006253 mRNA upstream 129688 950922 ~ 959903 (+) True AMCG00006253
AMCG00006264 mRNA downstream 4009 1102780 ~ 1107716 (+) True AMCG00006264
AMCG00006263 mRNA downstream 45006 1143777 ~ 1147913 (+) True AMCG00006263
AMCG00006270 mRNA downstream 101050 1199821 ~ 1213094 (+) True AMCG00006270
AMCG00006269 mRNA downstream 166761 1265532 ~ 1272008 (+) True AMCG00006269
AMCG00006276 mRNA downstream 179689 1278460 ~ 1284012 (+) False AMCG00006276
TU135722 other upstream 98769 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 240819 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 298529 774809 ~ 791062 (+) False G108319
TU135437 other upstream 298529 774809 ~ 791062 (+) True G108319
TU135365 other upstream 655686 429763 ~ 433905 (+) True AMCG00006231
TU135810 other downstream 181930 1280701 ~ 1286052 (+) True AMCG00006276
TU135836 other downstream 251612 1350383 ~ 1429987 (+) True G108585
TU135921 other downstream 637161 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 709786 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 2262583 3361354 ~ 3365565 (+) False G109309

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002463 True 2323 mRNA 0.38 9 NC_007112.7 47155424 ~ 47161996 (-)