RNA id: AMCG00006265


Basic Information

Item Value
RNA id AMCG00006265
length 1175
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00006265
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1156727 ~ 1160200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTCACTGGCAGCACCGCACTCTCACTGACAACCATGATGATGTCCGCGCTCTGGGCCCTGTGTGTGGCCTGGACCCTTCTAGTCTCAGTAGATGGGCAGTTGACCGCAGGCAAGATAAACATTATCAACAACAAGCTGGCTTACAGGTATGGCCACATCCAAGGCCAGGTGGCAATGGCATTCAACCTCCCCAGCAGCTTCTGCGACAACTCCAGCTCGGGCGATCTGGACAACATCCTGAAAGGCAACGAGGAATCCAGGGTCCAGAATGTGCTGAACAAGGGTGATGTCTACACTGACTCTATACGCCTGGCTGCCGCCACGCCACTGAAGCACAATACTTGCTCGGATCACGCAGAGTACCGCCTGCTCTACCCAGCCGGGAACAACTATGTGACCAAGCTGCAAAGGGACAGCAACACGGAGTGCATGGTATTCTTCTCGCTGCTGTCCCCCTGCACCCTCAAGTGCCTGAACAACAACAGGCCCGGAGTGAGCATCCTGGAGAGCTTGCAAGACTTCAGCTTCTGGAAAGCCGGCTACAAGGCGTTCGTGTTCGAGAAGATCTACATACACCCCTACTCCCCCTGCAACAAGGAGCAGCAGAAGCTACAGCTGATCACGCAGATCCACCAGAACGCACATCTCATCCCCTTTTACCGCTGCGACGGCAACAATTGCTGCAACTGTGCAAGCAAGCCAGCCGACCAGAACAACCCCTGCTTGGCTGACCGACTACCAGCACAGTGCTGAGGCCCAGAGTGTGCAGCTCAccgccctctccctctccgaGATAATCTGAATAAAGCAGTAAATCAGCATGACTCTGGgagtgtaaatgtttgtttgttttctggaatGTAATGATCTAAATTAGGAAGGTGACAGATgaagagagatggggagagagaatgAGACAGGGAGACAAAAAGTTTTGcagtcagtgctgtgtggactacAGTGTAATATATTTACCGCATTATCACTGTGTTCACTGTCTTTACTGTCCCCCGTCCTCACACATTCATATTCAGCAAAGTGACGGGGATAGCAACACAATTACATTCAGTATGGATTCACATGTCGGTGTAAGTTCTGtgtataaaaattgattgaaGTATCTATAgtaagccaaattatcatttacagatatctctaaattggAGATGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136001 lncRNA downstream 18775 1134901 ~ 1137952 (-) False AMCG00006266
TU135995 lncRNA downstream 37029 1109651 ~ 1119698 (-) True G108705
TU135975 lncRNA downstream 55435 1092864 ~ 1101292 (-) False G108689
TU135972 lncRNA downstream 58010 1040218 ~ 1098717 (-) False G108689
TU135974 lncRNA downstream 58010 1094724 ~ 1098717 (-) True G108689
TU136018 lncRNA upstream 20382 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA upstream 41096 1201296 ~ 1201681 (-) True G108717
TU136026 lncRNA upstream 51090 1211290 ~ 1213391 (-) False AMCG00006274
TU135963 lncRNA upstream 131838 1292038 ~ 1306880 (-) True G108682
TU136056 lncRNA upstream 160498 1320698 ~ 1321213 (-) True G108750
AMCG00006266 mRNA downstream 18782 1134934 ~ 1137945 (-) True AMCG00006266
AMCG00006258 mRNA downstream 83433 1068054 ~ 1073294 (-) True AMCG00006258
AMCG00006260 mRNA downstream 106999 1048178 ~ 1049728 (-) True AMCG00006260
AMCG00006259 mRNA downstream 109217 1042862 ~ 1047510 (-) True AMCG00006259
AMCG00006255 mRNA downstream 255882 896978 ~ 900845 (-) True AMCG00006255
AMCG00006268 mRNA upstream 3100 1163300 ~ 1170846 (-) True AMCG00006268
AMCG00006267 mRNA upstream 11481 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006271 mRNA upstream 21510 1181710 ~ 1191081 (-) True AMCG00006271
AMCG00006272 mRNA upstream 33070 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006274 mRNA upstream 51086 1211286 ~ 1216155 (-) True AMCG00006274
TU136000 other downstream 22037 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 416438 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 421317 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 610581 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 760748 395424 ~ 395979 (-) False AMCG00006232
TU136027 other upstream 55025 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 176987 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 184316 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 190285 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 190285 1350485 ~ 1554664 (-) True G108755

Expression Profile