RNA id: AMCG00006270



Basic Information


Item Value
RNA id AMCG00006270
length 975
RNA type mRNA
GC content 0.64
exon number 8
gene id AMCG00006270
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1199821 ~ 1213094 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTCTCTGTATCGCTGCCCTGCTGGGCCCCGGGGGCAGAGCGCTGGGACAGACCAGCTGGCCGTTGGGCAGGACCACTGAGGGCCCAACGCTGTCCACAGCATCTCCTGGGAAGTCGCAGCAGATCCCTTTAATAAAGTCTGTGAAGGGGGAACCCACACGGGACGGACCCTCCAACGGAAAGAGGGCGGGACCCGCTGCCGTCAAGAGCTCCGTGGACCAATCAGGAGCAGGAGAGGACATGGATGCTACAGACACCATGGGTGCCTTGGGTGGCAAGACGTCGTCACAGAAGGAGAAGGCGGAGGCAGAGGAGGGCGAGAAAGAAGGGAGcaagggaggggaggagggagagaagactGCCACCCCCACTGCCATGCCTAGTGCCTCCGCCGGGAAAGGACTGCTGGgacACGCTGCAAAgaccctcccctcctcctccttctcctcctcctcctcttcctcctctcctggCCGTGCGAAGATGAGTGTGTCCGGTCAGGGAAAGCCCGTCCTCTCGGCCCccactccctcactccctccctcttcctcccctgGCCCCTCCACTGCCGCTGCCCCCCCGGCCAAGATCCACAGAGCCAGGAAGACCATGAACAGAGCCCCCCCAGCCCAGAGCTCTGGGTCGGATCAGAGGAAGAGGGACATGCCCCGGAGGAAGAGCCGCAGTGAGAGCCCCTGGGTCAGACCCTCCCGGCgcaggaagaggagagagcgagcgagggagagaccagGAGCTGCAGGCCCCAGTGTGTCGTCCAGCTACACGGAGGTCCCTCTGGGGTCGCTGGACATCGCCACCCCAGACAGCCTGTCTCCACGCCAACACAGTGAGtttgtgtccctctctctggggCTGGAGTGTGCGAGTGCTCACGCGTATGTTGTGTCGGTACGTACGGTGCACAAGGTGTTGCTGCTTCAGCGTCACGCCGTCGCCATTGGACAGAGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135751 lncRNA upstream 6380 1162864 ~ 1193441 (+) True G108519
TU135752 lncRNA upstream 6380 1162864 ~ 1193441 (+) False G108519
TU135754 lncRNA upstream 6380 1162864 ~ 1193441 (+) False G108519
TU135746 lncRNA upstream 128049 1071294 ~ 1071772 (+) True G108516
TU135744 lncRNA upstream 129050 1070327 ~ 1070771 (+) True G108515
TU135793 lncRNA downstream 4785 1217879 ~ 1221424 (+) True G108555
TU135807 lncRNA downstream 85163 1298257 ~ 1298726 (+) False AMCG00006275
TU135825 lncRNA downstream 130458 1343552 ~ 1343755 (+) True G108580
TU135830 lncRNA downstream 136957 1350051 ~ 1397427 (+) True G108584
TU135839 lncRNA downstream 139724 1352818 ~ 1554665 (+) True G108587
AMCG00006263 mRNA upstream 51908 1143777 ~ 1147913 (+) True AMCG00006263
AMCG00006264 mRNA upstream 92105 1102780 ~ 1107716 (+) True AMCG00006264
AMCG00006262 mRNA upstream 101050 1089591 ~ 1098771 (+) True AMCG00006262
AMCG00006261 mRNA upstream 113834 1077293 ~ 1085987 (+) True AMCG00006261
AMCG00006257 mRNA upstream 160541 1026203 ~ 1039280 (+) True AMCG00006257
AMCG00006269 mRNA downstream 52438 1265532 ~ 1272008 (+) True AMCG00006269
AMCG00006276 mRNA downstream 65366 1278460 ~ 1284012 (+) False AMCG00006276
AMCG00006275 mRNA downstream 73735 1286829 ~ 1315558 (+) True AMCG00006275
AMCG00006282 mRNA downstream 147516 1360610 ~ 1415163 (+) True AMCG00006282
AMCG00006281 mRNA downstream 211313 1424407 ~ 1433866 (+) True AMCG00006281
TU135722 other upstream 208999 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 351049 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 408759 774809 ~ 791062 (+) False G108319
TU135437 other upstream 408759 774809 ~ 791062 (+) True G108319
TU135365 other upstream 765916 429763 ~ 433905 (+) True AMCG00006231
TU135810 other downstream 67607 1280701 ~ 1286052 (+) True AMCG00006276
TU135836 other downstream 137289 1350383 ~ 1429987 (+) True G108585
TU135921 other downstream 522838 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 595463 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 2148260 3361354 ~ 3365565 (+) False G109309

Expression Profile