RNA id: AMCG00006271


Basic Information

Item Value
RNA id AMCG00006271
length 2496
RNA type mRNA
GC content 0.50
exon number 18
gene id AMCG00006271
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1181710 ~ 1191081 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGAGGGAGAGATTTATTCGCTGAAGTTGGCAGGGCTGGTTTAGCGACTCCTGTCCTGTTCACACAGTCGCGCTGCTTTTTCATGGGATTTCACCTTGATTGTCCATGAGTGCCCGAAGAAGCCAGTCTTGAACTGAAGAAGTGGGATCTGACGAGGCAGCGGACATGGGGAAAAAGAAGGACGAGGCCAGTGCGCCGCAGTATGCAAAATTTGACCCCAGCTTCAACGGCCCCATCAAGAACAGgagctGTACAGATatcctgtgctgtgtgctgttcaTGGCTGCTATCGCAGGCTACATGGTTGTAGGAATTATGGcctggCTGTATGGAGATCCTCGTCAAGTCCTCTACCCCAGGAACTCCACTGGCATGTTCTGCGGACTGGGAGAGAACAAAGACAAGCCCAATGTCTTTTACTTTAACATTCTCAAGTGCGCCACGGCCACTAATATAATGGCAGCAGCTCTGAATGGACTGCAGTGTCCTACCACGCAGgtgtgtgTGAAGTCCTGTCCCAATGACTTCTGGATTGCTCCAGTATTGCCCAACACCATTCTCAtattGGGACGCTGTCTGCCCAGCACTAGCTTCCTGGACAAGATCCCCTCAAACTTCACATTGCCAGGGATGGTCAACGCCAACCAGACGGCCTCTAGCATCAAGAACGCCACCCGtgaTGTCGTCTCAGGGTTAGCGGGTGCAAAGGACATCGGTGTTCGGATCTTTGAGGATTTTGCCGTTTCCTGGTACTGGATCCTCATTACTGACCGTACTAACCCCGTCTCTCCCCAGTGGGCTGCTGATCGCTATGCTGtgattATCCTGGCTGTGCTGGAGGGGAtcctgctgctggtgctgctctTCCTCAGGACCAGGATCCTCATCGCCATCGCACTCATCAAGGAGGCCAGCAAggcGGTCGGTCACATGATGTCCACTCTGGTGTACCCTGTGATCACCTTCATCCTGCTGGGCCTCTTCCAGCGCAACCTGTTCAACCTGCAGATCTACAACGTGCTGGCCTTCCTGTGGGTGGTCAACTTCGTCATCGCGCTGGGCCAGTGCACGCTGGCCGGGGCCTTCGCCTCCTACTACTGGGCCTTCAGCAAACCAGGGGACATCCCTGCCCTGCCGCTGACTGCCAGCTTCTTCAGGACGCTGCGgTACCATGTGGGCTCCCTGGCGTTTGGCGCTCTGATTCTGACCATCATCCAGTTCATCAGGATCatcGCAGTCTATGGCAAGAACTTCTGCGTCTCGGCGAAGAACGCCTTCATGCTGCTCCTGAGAAACATCGTGAGGGTGGTGGTGCTGGATAAAGTGACTGACCTACTGCTGTTCTTCGGAACATTGCTGGTGGTGGGCGGAGTCGgagtgttgtccttcttcttcttctccggCAGGATCCAGCTGCCCAATGACACGTTCCGCGCAGAGACTCTCAACTACTATTGGGTGCCCATCATCacAGTGGTGGTCGGCTCCTATCTCATCGCTCAAGGCTTCTTCAGTGTGTACAGCATGTGCGTCGACACCCTCTTCCTCTGCTTCTtggaGGACCTGGAGAGGAATGATGGCTCGGAGCAGAAGCCCTACTACATGTCCAAGAGCCTGATGTCCATCCTgaacaagaagaacaagaagcccaagaaggagaagaaaggcAAGAAGGAGGAGAACTGAGAAGCTTCTGTccagagagatggagggggggagagaggaaaagagagaggagTGAGGGAGGGACAGCAGATGAGATTATAGTGCGTTCTtaagtttcacttttttttttttaaatgacaatttcgctgtttttaataataataataataagaagaatgaTTATAATGTTTTCAATGTGCCTTAACTGAGCGATGAAGCACTTTAACAATGCCCTCTAGTGGCTATGAGGAGACACAGATATAGATGTGGTAACAGTGACGGTCATATTGaaggaaatatatgtataaccATAGATTGACAGACTGACACAAGGACCTGTCTGCACTTGCATATTTACACAGACGGGAAGatgcacactgacagactggCAGACATGGGCATATAGATGTAAATATCATGATTGTTTATTGTGAGGCACAACGCAGAATTTACTTGGGAAATGAAACAGATTTATATTGATGTATCTCAggcgtacacacacacacacacaaacgtacACGGATGTTGATTTCCTCGCACACTGGCTGACACGGGTCCCAGTCCAGTTGCACACATGTTCGCTGGATGCTTTAAATCCAATCAACCATGAAGTGCCTTTTAATTCGAATGATTAGACAATGATGTTGTTAGAAGAGAGTTTCACTGTTTACTGTTGGTGGCAGAGGTGCGTGGACAGGCCGGGGGCAGAGAGAGGACTCTGCCGTCCCCCAGTCTTTACACAGACAGATTGTccatgttgttttctgtttttttttctatacacATGTTTAATAAATTTGAAACAGCTGCTTGAATCAAAACCAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136001 lncRNA downstream 43758 1134901 ~ 1137952 (-) False AMCG00006266
TU135995 lncRNA downstream 62012 1109651 ~ 1119698 (-) True G108705
TU135975 lncRNA downstream 80418 1092864 ~ 1101292 (-) False G108689
TU135972 lncRNA downstream 82993 1040218 ~ 1098717 (-) False G108689
TU136017 lncRNA upstream 10215 1201296 ~ 1201681 (-) True G108717
TU136026 lncRNA upstream 20209 1211290 ~ 1213391 (-) False AMCG00006274
TU135963 lncRNA upstream 100957 1292038 ~ 1306880 (-) True G108682
TU136056 lncRNA upstream 129617 1320698 ~ 1321213 (-) True G108750
TU136060 lncRNA upstream 137721 1328802 ~ 1332044 (-) True G108752
AMCG00006267 mRNA downstream 2646 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006268 mRNA downstream 10864 1163300 ~ 1170846 (-) True AMCG00006268
AMCG00006265 mRNA downstream 21510 1156727 ~ 1160200 (-) True AMCG00006265
AMCG00006266 mRNA downstream 43765 1134934 ~ 1137945 (-) True AMCG00006266
AMCG00006258 mRNA downstream 108416 1068054 ~ 1073294 (-) True AMCG00006258
AMCG00006272 mRNA upstream 2189 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006274 mRNA upstream 20205 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006273 mRNA upstream 57061 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006280 mRNA upstream 102315 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006278 mRNA upstream 107756 1298837 ~ 1300643 (-) True AMCG00006278
TU136000 other downstream 47020 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 441421 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 446300 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 635564 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 785731 395424 ~ 395979 (-) False AMCG00006232
TU136027 other upstream 24144 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 146106 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 153435 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 159404 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 159404 1350485 ~ 1554664 (-) True G108755

Expression Profile