RNA id: AMCG00006273


Basic Information

Item Value
RNA id AMCG00006273
length 1598
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00006273
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1248142 ~ 1261579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTGTAGCTGAAAATGGGAGAAGATGGAGTCACTTCaagaagaaagttattttatttagttcCCAAAACTGTCTTTGAGCACTACATCTGGGTTCTGGTAAAGGCAGCAGAAGACATCCCATATGTTCCCAGTTTCGTATGTGGTagaaacattacagaataatcTTGTTACCAGATGACGGATCAAAGGTTTCTTTTTCTGATCACTTGcaccattttaatttgctttttttttaaagttttttcaCTGTAGCACTATGTATTGATCCATACAGAGAGCACAGTTTAAGGTAAAAGAAGGCCAGCACCATGACATGCTTCAGATGCACTGCACTGGTGTTGATTACACGGCAAAAGTCCTCATGAGTTTGAAACTGTGGGAAGCAACACTCTGCCACAGTGTCGGGACAGTGAACCACTCCCCACGACAACAGAAACCGAAAGAGAAGGCGATTTGTGTCATTTCCCGTGAAGACCCTCTGCTCCATGGCCTCCTCCGCCCTGCTCAGAGAGCTGCAGTGCCCGCTGTGTCTGAGTCTGTTCACGGACCCGGTCAGCCTGGCCTGCGACCACAGCTTCTGTCGCCGCTGCATCCAGACCCTCCTGGCCTCCGACACGACAGCGCCCCTGTGCCCGCAGTGCAGAGCCCCCATCACCCGGAGGGCCTTCACCGTCAACCGGGTCCTGAGGAACATGGCCGACGCGGCGAGAGAGGAGCAGCAGAGACGCCGCAGACACGGAGAGCTGCGCTGCCCGGAGCACGACGAGAGGCTGAAGCTGCTGTGCGAGACGGACCGGCAGCTGGTGTGTCTGGTCTGCCGGGACAGCGAGGCCCACAGCGGGCACGTCTTCAGACCGGTGCAGGAGGCGGCGCGGAGCTGCCAGGCACAGCTGCGAGGCGCTCTGCAGTTTCTCTCTGAGGACAGTGCAGCTGTGGAAGGCCTGGCCAGCGAGCAAACAGCACAGATCGACAGCACcagaATCGGGGCTCAGTTTGCGGAGCTGCATGAATTCCTGCGGcgcagagaggaggaggtgaaGAGGGATCTGCAGCAAGCAGAGCAGGAAGATCTGCAGGCCATGCAGAAGAACCTGCCACAGATCGAGACAGCGCTGAGAGAAAGCAGAGCGAAAGAGAGGGCTCTGCAGTGCGGACTGGACATCCCTGAGCCGGACAACTTTCTACTGTGGTGGTGTGACAAGGGGGCCACTACAGTGGACGGGCTGAAGAAGGAAATGCCACGATCAGCCAGGGATACTGAGGGAGTGGTGGAGGCAGTGTATAAGTCCAGGCTGCAGTCTCTGCGTGTCACCCCAGGCTCTCTGACCCTCGAGCCTTACGAGACTCACTTGCAGTTTTTCATCTGGAAGGAGATGCTGAAAGTCATCAAACCAGTTCCTGAGCGCTTGACAGTACCTTCCAGTTATGGTCTGAAAGTGTCCAGCGATGGATCAAGTGAAGTATTAAAGATCACCATGTCTGGCCTTCAGGTGCATCCCTCCACCTCCCCATTGTGCCCCTCTGTTGCTCTTTCTGCCTTGTGTTGCTCTGTGGATCTGTCTCAGGACCTGAACAGCCCTCTGCCAGTTCTTTAA

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136026 lncRNA downstream 34751 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 46461 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA downstream 46461 1201296 ~ 1201681 (-) True G108717
TU136001 lncRNA downstream 110190 1134901 ~ 1137952 (-) False AMCG00006266
TU135995 lncRNA downstream 128444 1109651 ~ 1119698 (-) True G108705
TU135963 lncRNA upstream 30459 1292038 ~ 1306880 (-) True G108682
TU136056 lncRNA upstream 59119 1320698 ~ 1321213 (-) True G108750
TU136060 lncRNA upstream 67223 1328802 ~ 1332044 (-) True G108752
TU136067 lncRNA upstream 82937 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 88506 1350085 ~ 1397331 (-) True G108756
AMCG00006274 mRNA downstream 31987 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006272 mRNA downstream 48148 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006271 mRNA downstream 57061 1181710 ~ 1191081 (-) True AMCG00006271
AMCG00006267 mRNA downstream 69078 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006268 mRNA downstream 77296 1163300 ~ 1170846 (-) True AMCG00006268
AMCG00006280 mRNA upstream 31817 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006278 mRNA upstream 37258 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006277 mRNA upstream 76578 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006279 mRNA upstream 96818 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 213298 1474877 ~ 1493970 (-) True AMCG00006284
TU136027 other downstream 31958 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 113452 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 507853 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 512732 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 701996 479582 ~ 546146 (-) False AMCG00006241
TU136062 other upstream 75608 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 82937 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 88906 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 88906 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 106503 1368082 ~ 1510540 (-) False AMCG00006279

Expression Profile