RNA id: TU136026


Basic Information

Item Value
RNA id TU136026
length 425
lncRNA type sense_over
GC content 0.56
exon number 2
gene id AMCG00006274
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1211286 ~ 1216184 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGGAAGTGTGGTGCTTTGTGCGGGCACTGCAATGCGCTGTTCCACGCGTACCGGGTTTAACACGAGCAATCACCGGACAGTGCTGGCCGAATGCATTATTCATAATCAATAAAGCTCGCCGACTGTACGTGGGGCGAGAAATAAAATGTCTCCTGTGCCTTTAAACGGGATCTCGCTGCGTCCCGTGCAAAGTCTCGTCGCAAACGAGAACACGAGCAAACAAGAGACAGACGGGGCGAGAAAGGGACGGTGAGAGGAAAGTGATGGGGGCTTATTGCTGAGCAGGCAACCGCAATCAGCTCTGTCCAATGGCGACGGCGTGACGCTGAAGCAGCAACACCTTGTGCACCGAGTGCCCGAGCTGCTGTTGGCGCTGGGGTTGCTGTTCGGGTTGGTCCAACCAGACAGACGGACGACATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136018 lncRNA downstream 9609 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA downstream 9609 1201296 ~ 1201681 (-) True G108717
TU136001 lncRNA downstream 73338 1134901 ~ 1137952 (-) False AMCG00006266
TU135995 lncRNA downstream 91592 1109651 ~ 1119698 (-) True G108705
TU135975 lncRNA downstream 109998 1092864 ~ 1101292 (-) False G108689
TU135963 lncRNA upstream 78647 1292038 ~ 1306880 (-) True G108682
TU136056 lncRNA upstream 107307 1320698 ~ 1321213 (-) True G108750
TU136060 lncRNA upstream 115411 1328802 ~ 1332044 (-) True G108752
TU136067 lncRNA upstream 131125 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 136694 1350085 ~ 1397331 (-) True G108756
AMCG00006272 mRNA downstream 11296 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006271 mRNA downstream 20209 1181710 ~ 1191081 (-) True AMCG00006271
AMCG00006267 mRNA downstream 32226 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006268 mRNA downstream 40444 1163300 ~ 1170846 (-) True AMCG00006268
AMCG00006265 mRNA downstream 51090 1156727 ~ 1160200 (-) True AMCG00006265
AMCG00006273 mRNA upstream 34751 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006280 mRNA upstream 80005 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006278 mRNA upstream 85446 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006277 mRNA upstream 124766 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006279 mRNA upstream 145006 1358397 ~ 1371414 (-) True AMCG00006279
TU136000 other downstream 76600 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 471001 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 475880 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 665144 479582 ~ 546146 (-) False AMCG00006241
TU135541 other downstream 815311 395424 ~ 395979 (-) False AMCG00006232
TU136027 other upstream 1834 1215225 ~ 1216184 (-) False AMCG00006274
TU136062 other upstream 123796 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 131125 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 137094 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 137094 1350485 ~ 1554664 (-) True G108755

Expression Profile