RNA id: TU135810


Basic Information

Item Value
RNA id TU135810
length 2492
RNA type TUCP
GC content 0.45
exon number 6
gene id AMCG00006276
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1278460 ~ 1286052 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtctattttaatttctctccctccccaggcCGATCTGTATCCCCTGTACTAAAGATACTAGTCGAGCTCTAGGGTTGTCTGGGAATGTGAATTGTGGAAAGCACGGGAAGGAGCTGTTGAACAAGGAGTATGAGGTGAGCAGCTTTATGACAGTGGAGGGCACCGATGTCACCAGGAAGCAAGCCAAAATCAAGCTGCTAGGCCAGAGAGACAGATGCATCAAAGACGCCCTCCTCTCCCCAAACGTCACAGCCACCGATGCCACAAAACTGGTGACAGAACGTTTCCTGTGCAGTGGGGGCACGGAGCCCACTGTGGATGACATGACTTGCAAAGGTGACTCGGGAGGAGCTCTGTTTCTGGAGAGGAAGCAGCGGCTGATACAGgtTGGGGTGATCAGCTGGGGAAACAAGGAATTGTGTAAATCtggtggaagaaaaacaaagagcgACTCCAGGGACTATCACATCAACCTGTTCACAGTGCAGCCCTTCCTCAAGAAATACCTGGGGGAGGAGACTGACAGCCTGCCCAGACAGCTGGAGTTCATTGACTAAGCGAGGGGTGgcgagaagagagagagagagagagagagagagagagagagagagaaatattcCCATTCCCAAGATGCATACTGGCACAGTGCTCTTGTGCAGAGGAAGCCTCACAATTTAGAGTGGGGGGGGTGAGGGTTGTGTTTCAACAGGAGCTCTCAGTTACTcttttgtataattgttttctaCCTTAATTCAAGACTTGCACACTTAACTATTAAACCTGATAACTGATCACCGTGTTCAATTTCTGGAGATATTGTGCCTGTTGACCGTTTCGGAGTCTGGGAAGAAGTGTTCAATTCagccagttaattgtttaattagatcaattaaggaaATAAGAGCTGTGCTGGAACATTACCCAGAAGACACTGGGGCCCCTCTAGGCCAAGAGCCTGTGTAGtctgtagtgcagtgcagtctctCGTCTCGGCAATTCTAGTTCTTTAGGGCTGAAGGGGCTCTTAGTTTGCATTTTGCCTCAGGGTCCTCATTATTACTGACGTGAGTGTTAGGACACAAATTTAGATCACCTCTTGATTCAGTGATCAGATAGTCCATTTACCCCTGCTGCACGGAAGCAGCTGTACGATCGGACTCAGGATGAGAACAAATCCCAAAGGACGGACCTGTACAACTGATACAGCAAAATGCCATAGGGCACaagtttgttatttatgatttatgtcaaggtcaaagttttgatttggtctggcccTTAGATATGATGAGTGTATtactaatcatcatcatcatcaaaattatcataataatcatcatcatcatcatcatacattGATaagcacacacagagacaagcaCACATGctaacacatacatacacaaacacacacatacatctaaacagacacaatcacacacacacacacacacacacaaacacaagcatacacacacagaaacacacacacgccaagacatacacatacaaatgcaaaattcaGCTTCGAGGAACAGAGATAGCCTGAATTAAATTATCGATTTAACTGAATCTGTCTGATTAGCCTAAATTAGTTGAACCAGTTACTAGGAACAGGGCACTGGTGTTCAATCATATTGTCCTGGAGTTCAGTCATAATGTCCTGGAGTTCACTCACACTGTCCTGGTGGTCACACTGTCCTAGTGTTCAGTCACACTGTCCTGGAGTTCAGTCATATTGTCCTGGTGTTCACTCACACTGTCCTGGTGGTCACACTGTCCTAGTGTTCAGTCACACTGTCCTGGAGTTCAGTCATACTGTCCTGGTGTTCAGTCACACTGTCCTGGTGTTCAGTCACACTGTCCTGGTGTTCAGTCATATTGTCCTGGAGTTCAGTCATATTGTCCTGGTGTTCACTCACACTGTCCTGGTGTTCAGTCACACTGTCCTGGTGTTCACTCACACTGTCCTGGTGGTCACACTGTCCTAGTGTTCAGTCACACTGTCTCAGGGTTCACTCACACTGTCCTGTGAGTCACATGGTCCCACACGGGCCAGAGAGGGGGTGGAAAACAAAGGGCAATAGAAAATCTACAGCACacttacagtacagtgtcaCACAGCAGGCAACACAGGGCCTGTGCTGTGGATGAACACTTGTGGGCAGACAGGACTGAGACGGGAGATGCTGCCTGTGTGTATTCGGTTTGATCATGCAgttatgttttttggggggtggagggTGCGGTTTGGGTCTTTCTCTCtggacacatttaatttttgctcacagatactgtacactgtatagctgtgtctgaaaataaatgttttgaacaaaatattttcttgatATGTTGCGTTTGTGTGTTCACGTGAATTCTGTTGGTAGTGTTTTGCATTGTCAGTTTCCAAGAAATGTGTGTAAACAATTGAGAAATACTGTAAAAGTTTAAATGCAATGGGATTAAAGTAAAGTTAACAAACCAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135793 lncRNA upstream 59277 1217879 ~ 1221424 (+) True G108555
TU135776 lncRNA upstream 79020 1201294 ~ 1201681 (+) True G108540
TU135751 lncRNA upstream 87260 1162864 ~ 1193441 (+) True G108519
TU135752 lncRNA upstream 87260 1162864 ~ 1193441 (+) False G108519
TU135754 lncRNA upstream 87260 1162864 ~ 1193441 (+) False G108519
TU135807 lncRNA downstream 12205 1298257 ~ 1298726 (+) False AMCG00006275
TU135825 lncRNA downstream 57500 1343552 ~ 1343755 (+) True G108580
TU135830 lncRNA downstream 63999 1350051 ~ 1397427 (+) True G108584
TU135839 lncRNA downstream 66766 1352818 ~ 1554665 (+) True G108587
TU135850 lncRNA downstream 187320 1473372 ~ 1474967 (+) True G108595
AMCG00006269 mRNA upstream 8693 1265532 ~ 1272008 (+) True AMCG00006269
AMCG00006270 mRNA upstream 67607 1199821 ~ 1213094 (+) True AMCG00006270
AMCG00006263 mRNA upstream 132788 1143777 ~ 1147913 (+) True AMCG00006263
AMCG00006264 mRNA upstream 172985 1102780 ~ 1107716 (+) True AMCG00006264
AMCG00006262 mRNA upstream 181930 1089591 ~ 1098771 (+) True AMCG00006262
AMCG00006275 mRNA downstream 777 1286829 ~ 1315558 (+) True AMCG00006275
AMCG00006282 mRNA downstream 74558 1360610 ~ 1415163 (+) True AMCG00006282
AMCG00006281 mRNA downstream 138355 1424407 ~ 1433866 (+) True AMCG00006281
AMCG00006287 mRNA downstream 250855 1536907 ~ 1545850 (+) True AMCG00006287
AMCG00006286 mRNA downstream 287076 1573128 ~ 1574818 (+) True AMCG00006286
TU135722 other upstream 289879 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 431929 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 489639 774809 ~ 791062 (+) False G108319
TU135437 other upstream 489639 774809 ~ 791062 (+) True G108319
TU135365 other upstream 846796 429763 ~ 433905 (+) True AMCG00006231
TU135836 other downstream 64331 1350383 ~ 1429987 (+) True G108585
TU135921 other downstream 449880 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 522505 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 2075302 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 2217129 3503181 ~ 3506679 (+) True G109362

Expression Profile