RNA id: TU136062


Basic Information

Item Value
RNA id TU136062
length 3089
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00006277
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1337187 ~ 1341665 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGTACCCCCTTCAGCTGCAGCCCTGCACTGCCTACTTGCCTGTGTACCCACTGGGGACCTCTgggCAACCCTACATGCAAGGGGGGCCAGGGCATCCAGGAGTTGCCCCAGGGCAGATGCCCCTGCAGATGCCCCCTGGTATTACTCTGATGGAGCCACGCCGCCCCCCCCATGATTACCTGCCTATTGCTGTGCTGACGACTGTGTGCTGCTTCTGGCCCACAGGCATCATCGCCATCATCAAGGCTGTGCAGGTGCGGACGGCCATTGCCCGTGGCGACATGGTCTCTGCAGAGATCGCGTCTCGTGAGGCACGGAACTTCTCGTTCATCAGCCTGGCTGTGGGCATCGCCTCCATGGTCCTCTGCACCATCCTCACTGTCGTAGTCATCATTGCCTCTCAGCACCACGACGACGAGTGGGAGCCCTAGCGATCACGCTCAGTAACCGTGGCAACCGCCTCCAGAGGACCACTGGAGGGACCAgacttactgacacactgactgactgacacactgactgactgacacactgactgactgactgacacactgactgactgaatgacacactgacggactgactgactgacacactgacggactgactgacacactgactgactgacagactgacacactgactgtctgactgactgactgactgatacactgactgactgacacactgactgactgactgacacactgactgactgactgactgactgattgacacactgactgactgactgattgacacattgactgattgatagactgactgaatgacacactgacgGACTGAttgtctgacacactgactgacacactgactgactgactggcacactgactgaacaACACACTGACTCATAGACTGACTGAacgacacactgactgactgacacactgattgactgactgacacactgactgattgactgactgactgatagtctgactgaatgacacactgactgactgattggcTGACACAttgaatgacacactgactgactgactgacacactgactgaatgacacactgactgactgattgacacactgactgaatgacacactgactgactcagtTTTACAGTATTCACCAttagttttgttaatttgtggATTACAAACTTGAACCTGTTTTCTACTGCACtcatgttttttcatattttaaggATTGGATCTTATGGGGATGACAAAAGCCATGATCAAACAATGCATTCTTGGGACAAATAACAGCAACATTTGaagaaaagcatatttttgGTGTCGTTTCATAAGGAAGGTTCCCTTTTCTgtgtttggaaaaacaaaatggaatccATTTGTAGAATATTCatcaaaataacatgaaatgcaATGATGAGGCCCTTCAAACACACAGCCTTCGGAGAGACACCGGActcaatacaatatatacaaatgtcatCAATATCTACATCTACTGTCCACTAGGTTTCACTCCCAGGATGTCACTGGTGATATTTTATCAACCCGTGTTCACCTTTTTCACCTACGATATAATCCTCAATCCGTGATTCCCAGAACTGGTGAAAGCGTTTAAGTATTTTAAGTCTGTGTACATTTCAacacaaataagaaattaaaaggcTTTTCTGCTCTGGAATCAATTCAGAGGAGTGCGACCAGGGTGCTTCCTGGTCTTAAAGGACTGTCCCAAGCTTCAGCCTGGAAGAGAGATGATTATGAGGGGACTTGATAGAAGAAGTGCTCGACATCCTAAAAGAGACCCAAGTGGCTTCTTCGCAGTGGACAGGGCCATCAGGCAgggcttcttcacacagagtgtTGTGGGAGTGTGGAACAGGTTCCTTCAAGAAGAAGGCTGATGATATGCTTGACTCAATTAGTAGGACCCTGTGATTTGCATGACTCAactttttaaacagtgtttcaGTCATGTAAAATGCAAGGCCCTAGTATCAACAAGACAAACCAAAAGAGAAATGTGTGCCACACTGCCTCCACTCGCCTTCTGTGTCACATGGTCACAAAATCTCACAAAATCTCCTCCATTAACAGTCTGCTTTCAAATCTCCTGAGGCTCTCCTGTGAAGGTTCCCATCCCCACCTCAAACTCGTGACACTGCATCAATAGCAACCAAGAGGGCAGCCTGACAACCACCTCAATCATTTCTAGGAACGACTGACTTATCTACTTGACAAGCTGATTCATTGATGGATTGACTAACtcatacactgactgactgactgactaactgaacAACTAATCACTTGATACTTGACTGACTGAGTGgtacacagactgactgactgactgagtggtACGCTGAGTGACTTGACCACAACCCTCGTTGCCAGACTGACCAAAATACAGCAAACCAATCCACAATGTGATCCGCTGACGTGCCAAGCTCACCACATCAACCCTTCGATGGATTCCAGCACGGACTGGGACAGAGAATGAACCGAGTCCTTAACCCACGGATGCGACTGAACAGACTATTACTCTGGTCTCGAGGAGAGGAAGTTGATTTGCAATGAAATGCCAAATGCTGGGATGAGATGAGAACAAGAAAATAGTGGAATGATAGTGTAGGGAGTTAACGCTGATTCCAAGCCCCTTACAACTGAGTTACTGAGAAATATATGCTTTTACTGCCAAACACAACATGcactggagggagagagatcgAATTGTAACTGGAACTCCACTTGCCACACGAGCCACACGAGTGACATCTGCTGTACAGCTGGGTTGACAAACGGCCTGGGGGAGAGAACGAGGTTTGTCTATAgtgtataaaataatagtaCAGGAataggagggagagggagagggagagcgcacgacatacagttttgtttgaaaaGATGCAGTAATAATTAAAGTTTGAGTGCGTATGAGAGACACGGGGAGATGGTTAAAGTGAATTATTCCTACTTGCTTGCTCTGTCACTCTGCCTCTTTTTTCAgtgcctctctctttctccctcttgcCTTCTGCCCTCCCCTATGTCATAGACCGgtctctctgtcttcctccctccctcatcATCACTCTTTTCCCCTCCTATTCTCTCCCTCCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136060 lncRNA downstream 5143 1328802 ~ 1332044 (-) True G108752
TU136056 lncRNA downstream 15974 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 30307 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 123796 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 135506 1180582 ~ 1201681 (-) False G108717
TU136067 lncRNA upstream 3071 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 8640 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA upstream 17647 1359092 ~ 1359504 (-) False AMCG00006279
TU136077 lncRNA upstream 63948 1405393 ~ 1409747 (-) True G108760
TU136089 lncRNA upstream 162753 1504198 ~ 1560390 (-) True G108770
AMCG00006278 mRNA downstream 36544 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 39217 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 75608 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 121032 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006272 mRNA downstream 137193 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006279 mRNA upstream 16952 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 133432 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 152915 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 208998 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006291 mRNA upstream 254227 1595672 ~ 1599457 (-) True AMCG00006291
TU136027 other downstream 121003 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 202497 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 596898 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 601777 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 791041 479582 ~ 546146 (-) False AMCG00006241
TU136064 other upstream 3071 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 9040 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 9040 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 26637 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other upstream 132033 1473478 ~ 1474950 (-) False AMCG00006284

Expression Profile