RNA id: AMCG00006278


Basic Information

Item Value
RNA id AMCG00006278
length 921
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00006278
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1298837 ~ 1300643 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGAAGACTTGCAAGTTGAACCGACAAGGTAAAAGTATATctactgttattattagtagtagtagtattatagtGTAACAGTCGCGCggttatatattaattttattttgcacattcgTTTATATAAAAGTGCGCGTGGTTATATggatatttattataataatagccTACTTATTAttaggctgttattattattgttattaattcgTCTGATTTCCACTGTTTCACTGTAATTACAGACTAACACAGAACTGTAAAAGCACAGCCTACATTGCTCTGTCGCTTATATTATAACCCCAAGACTTCCGTGTTCAAATACAGCAGTTCTTCCCTTGACTGGCGTAATGCAGTGCATCGCTTTAGTCTGTTCGTGTTGTTTTGTGTGACCCACTTACATTCAAAGAGATATTTACGGGGACAATATATGAAGATGTTTTACGTAACTGGACATGAGTTATGGTGCAGCACTTACAGCGAGAGTAGTGTGGTTTAGTGGGatgcaatacagtgcagtaaagtgcagtTTTAGCAAGTACCTGTACTCTGCTGTACTCTGCTGTAATGTGCTGTTGTGCAGTGCTGCTACGAGATGGTGCTGTTCCCGACCTCCCTCACCGAGGAGGAGGAGTCCCTGCAGAAGAAATACGCTAAGCTCAAGAAGAAGAAAAAGGCTCTTCTGGCCCTGAAGAAACAGAGCTCCACCAGCCAGGCCACCCAGGGAGGACTGAAGCGCaCTCTCTCTGACCAGCCGGTGGTTGACACAGCTACAGCCACCGAGCAGGCCAAGATGCTGATCAAGTCCGGGGCGATCAGCGCCATCAAGTCCGAGAACAAGAACTCCGGCTTCAAGCGCTCGAGAACACTGGAGGGCAAGCTCAAGTCTAAACGCCCCCACAGAAAATCTCTTTATGAAAGGTGA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136026 lncRNA downstream 85446 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 97156 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA downstream 97156 1201296 ~ 1201681 (-) True G108717
TU136001 lncRNA downstream 160885 1134901 ~ 1137952 (-) False AMCG00006266
TU135995 lncRNA downstream 179139 1109651 ~ 1119698 (-) True G108705
TU136056 lncRNA upstream 20055 1320698 ~ 1321213 (-) True G108750
TU136060 lncRNA upstream 28159 1328802 ~ 1332044 (-) True G108752
TU136067 lncRNA upstream 43873 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 49442 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA upstream 58449 1359092 ~ 1359504 (-) False AMCG00006279
AMCG00006280 mRNA downstream 867 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 37258 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 82682 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006272 mRNA downstream 98843 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006271 mRNA downstream 107756 1181710 ~ 1191081 (-) True AMCG00006271
AMCG00006277 mRNA upstream 37514 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006279 mRNA upstream 57754 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 174234 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 193717 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 249800 1550443 ~ 1555554 (-) True AMCG00006283
TU136027 other downstream 82653 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 164147 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 558548 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 563427 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 752691 479582 ~ 546146 (-) False AMCG00006241
TU136062 other upstream 36544 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 43873 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 49842 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 49842 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 67439 1368082 ~ 1510540 (-) False AMCG00006279

Expression Profile