RNA id: AMCG00006279


Basic Information

Item Value
RNA id AMCG00006279
length 2007
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00006279
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1358397 ~ 1510540 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTGGACAGTGAGAGAGGActtctactgctgctgctgctgctcaacACTGCCGCCTCCCTCACAGTTGACGTCCCTCCAGAGACAGAGCTGAAGGCTGGCAGCACTGTGACTCTGCGCTGCCTCctgcacactggacacagcCCTGGAGTCTGCAGTCACCCATACACCAGTGCTGGTGTGAGAGTGAGCTGGGTCTCTGAGACAGGCGCTGAGCTGCAGGGAGACACATACCAGATCTCCACTGATCACCCCTGTCTCTCCACACTGACTGTGAGGCTCCAGACCTCAGACCACAACACACAGTGGAGATGTGATCTGACAGAGGGGGGAGCAGTGAGGGTCTCTCAGAGACACACCATTAAACTCACAGGGGCGTCAGTGCAGGACCTCCTGGTGTTTGACAGAGAACCTGGCAGAACAAAGCACAGCAACGGCATCCCTGAGCACAACACCACTCCTGCCACAACCGCCAAAATTGAAACCCCTAAACCAACCACAAATTCAGCCTCCCTTCCCCGTCCTCCCTCCACAAGTGACACGCTGTACTCCTCTGTGGGAGGGAGTGCGATCCTGCCTTGTGTTGGGGTGACCCATCAACATTGCCCTTCAACTACGTGGATGTTGAGTAGGAAATTCAGACCAGACACTGAAGTGGTTAAGCTTGGGAAAGTCACAGATGTGGAGCGAGCTGGGAGACTGAGTGTGGGGTCTGACTGCTCTCTGCACATAGAGAGGCTCAAATCACCGGATGCTGGAGTCTACACCTGTTCCCACAGAAACACACCTGGAACATCTGTTACACTTCATCTCCTGAACAtTACGGTCAGTCTGCAAACGGACTTGAAATCGGGCACTGAGATTGAGCTTCATTGCTTTATATCCACATCCAGTGCTATTGAGCCATGCAACCCTCCACCCAAGGGCGTGAGAGTGGGCTGGGTTAACGGGAGAGGGGATGCCCTGCAGGGCAGCAGGTACACAGTTAGAAATGAGTCTGTGTGTCACTCTGTTCTGACACTGACTCTGCAGCCCTCAGACCACAACACCCAGTGGAGATGCGACCTGACGCAGGAGGGATCCCAGAGGGTCACGTCAACATTCACCACTGAACTCACAGATGGGATACAGCAGGTGTACCGGGTGGTGGGCAGCTCTGTGACGTTGCCTTGCGCCATCAATGTCACTCAGACCCTGGGACAGGGAGAGAAGCTGGAGTGGTTCCTCAGGACATGGGACGACCCTATAGGACACACCctattctctctgtcctctgatTGGAAAGTCTCTCCCATTAACCCCACTGTGGTACCTGGAGTAAAGATGGCAGCCAATTCCTCACTGGTTCTCCCTGCCCTCTCCGCACAGCATTCTGGGATTTACCTGTGCTCTCTGTACAGCGGCTCCTCTGTGAAGAAAGAGTTGTGGAGGCTGGCTCTCCACATTGTAGAGGTGAGCTCAGACCCGACTGGAGGGATACAGAAGGGCTCTGGCATCAACCTTACTTGCTCCCTCACCTGCGAGGACGTCTGtgataaaaacactgaattgaCCTGGAGGGACAGTGCAGGATGCAGCCTGCAGGGCGGTCCTGCTGAGCGAGTGAACAACACCCTCAGCTCCTGGCTGCTGGTCCCTGAGCTGCAGAGCTCTGAGAGGATCTGGTGCAGCGTGGTCAGAGAGGGGCTGGAGAGGGTGGAGCAGGACATCACTGTTGTGGTATCAGGCGGACAGGCTGGACTAGCAGTGACTGCAGCAGTGTCCAGTGTGGCTATCATTATCTTGCTGGTCTGTGTTGTTGCCATCAGGACTTACATGAGGAAGAGCAGGAAAGGACGCTCAGGTGCAGGACAGCCTGCTGATGGGGTGGCTGACCTGTATGAAGACTGCGGAGACACCAGCTACGCCCAAGTGTTGTTCAACGGAGACAGACAGCAAGCAGAGaggagacgagagagagaggacactgCAGCGGTCTACTCCCTGCTCTCTGCTGTCAACTAG

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136067 lncRNA downstream 11556 1344516 ~ 1346841 (-) False AMCG00006292
TU136060 lncRNA downstream 26353 1328802 ~ 1332044 (-) True G108752
TU136056 lncRNA downstream 37184 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 51517 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 145006 1211290 ~ 1213391 (-) False AMCG00006274
TU136077 lncRNA upstream 33979 1405393 ~ 1409747 (-) True G108760
TU136089 lncRNA upstream 132784 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA upstream 165530 1536944 ~ 1542361 (-) True G108772
TU136113 lncRNA upstream 290339 1661753 ~ 1663033 (-) True G108790
TU136114 lncRNA upstream 293534 1664948 ~ 1670631 (-) True G108791
AMCG00006277 mRNA downstream 16732 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 57754 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 60427 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 96818 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 142242 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006284 mRNA upstream 103463 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 122946 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 179029 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006291 mRNA upstream 224258 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006292 mRNA upstream 228723 1600137 ~ 1637731 (-) True AMCG00006292
TU136068 other downstream 5456 1350485 ~ 1352941 (-) False G108755
TU136062 other downstream 16952 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 142213 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 223707 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 618108 737260 ~ 740289 (-) False AMCG00006245
TU136085 other upstream 102064 1473478 ~ 1474950 (-) False AMCG00006284
TU136106 other upstream 275066 1646480 ~ 1660004 (-) True G108784
TU136131 other upstream 351147 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 509868 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 648587 2020001 ~ 2024143 (-) True AMCG00006313

Expression Profile