RNA id: AMCG00006280


Basic Information

Item Value
RNA id AMCG00006280
length 408
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00006280
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1293396 ~ 1297970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCACTTCAGCACAGACTGCCCCTGCAGAGACAATctgtGCGTTCATCACCTTTGAAAAGATGGAGTCTGCAGACCAGGCAGTGGCCGAGGGTCTCTGTGCGCTCGCTCTGCGGGACGAGGGTCTCTGTGCGCTCGCCCTGCGGGACAAGGTCAATGAACTCCAGCTTGCCGGGCTGCTCCGCGCCCTGCTGCCCCAGGTGTTGTCTGAGGAAGGGCAGCACAGCAGCCAGGTCGATGTGATAGTCCCGGGCCGAGTCAGGCTGCTGGCCCTCGCGCACTCCGCTTGCCCCGCACAGGTTCGTGTTTCCCCAGCTAATCACCCCAACctagagaaagagaaaGCTGAGTGCCCCCAGTACACAGGAACCGGTCCGTCACGATCTCCGTGGGTTCAGAGGTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136026 lncRNA downstream 80005 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 91715 1180582 ~ 1201681 (-) False G108717
TU136017 lncRNA downstream 91715 1201296 ~ 1201681 (-) True G108717
TU136001 lncRNA downstream 155444 1134901 ~ 1137952 (-) False AMCG00006266
TU135995 lncRNA downstream 173698 1109651 ~ 1119698 (-) True G108705
TU136056 lncRNA upstream 22728 1320698 ~ 1321213 (-) True G108750
TU136060 lncRNA upstream 30832 1328802 ~ 1332044 (-) True G108752
TU136067 lncRNA upstream 46546 1344516 ~ 1346841 (-) False AMCG00006292
TU136073 lncRNA upstream 52115 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA upstream 61122 1359092 ~ 1359504 (-) False AMCG00006279
AMCG00006273 mRNA downstream 31817 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 77241 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006272 mRNA downstream 93402 1193270 ~ 1199994 (-) True AMCG00006272
AMCG00006271 mRNA downstream 102315 1181710 ~ 1191081 (-) True AMCG00006271
AMCG00006267 mRNA downstream 114332 1171681 ~ 1179064 (-) True AMCG00006267
AMCG00006278 mRNA upstream 867 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006277 mRNA upstream 40187 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006279 mRNA upstream 60427 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 176907 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 196390 1494360 ~ 1498054 (-) True AMCG00006285
TU136027 other downstream 77212 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 158706 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 553107 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 557986 731441 ~ 735410 (-) False AMCG00006245
TU135562 other downstream 747250 479582 ~ 546146 (-) False AMCG00006241
TU136062 other upstream 39217 1337187 ~ 1341445 (-) True AMCG00006277
TU136064 other upstream 46546 1344516 ~ 1623374 (-) False AMCG00006292
TU136068 other upstream 52515 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 52515 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 70112 1368082 ~ 1510540 (-) False AMCG00006279

Expression Profile