RNA id: AMCG00006281


Basic Information

Item Value
RNA id AMCG00006281
length 1137
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00006281
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1424407 ~ 1433866 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTGGACAGTGAGAGAGGActtctactgctgctgctgctgctcagcaCTGCTGCCCCCCTCACAGATGTCACTGTGTTCTCCACTGTAGGGGGCAGTGCTGCTCTGCGCTGTGAGACAGTGATCTATACAGACTGCTCTTCAACTAGATGGCTCTTTAATCGGAGATCCCAAGCAGCTGTTGAACTGGTTAATCTTGGGAAGGTGAAGAACAATAATCTGGAGAGAGCTGGGAGACTGAGTGTGGGGTCTGACTGCTCTCTACACATAGACAGACTCCACACACAGGACACTGGAGTCTACACCTGTCGACAGTTCATCAATGAACAGAAACAAGGAGGGGACAACACTGTGTATCTGGCCCTTCTCATCATTGAAGTCCCTCCAGAGACAGAGCTGAAGGCTGGCAGCACTGTGACTCTGCGCTGCCTCCTGCACACTGGACACGGCCCTGTAGTCTGCAGTCACCCCCCGTACACCAGTGCTGATGTGAGAGTGAGCTGGGTCTCTGAGACAGGCGCTGAGCTGCAGGGAGACACATACCAGATCTCCACTGATCACCCCTGTCTCTCCACACTGACTGTGAGGCTCCAGACCTCAGACCACAACACACAGTGGAGATGTGATCTGACAGAGGGGGGAGCAGTGAGGGtctcacagagacacaccatTAAACTCACAGGGTCTGCAGTGGAGCTGGCGGTGAGACTGACTGTGTTCTTCATCGCTCTGATCGCCCCTCTGGTCGCTGGAGTCGTGGTTTATACCAAGACGAGGagcagcagacagacagAAGAAGTGCCACCTGGGACGGAGCTGACTTCCTGTCCGACCTCCCAACCGTTCCCCGCCTGCCACCATGTGACCTCCTCAATGCAGCCAAACCCAGTCATCACTCAAACACGCAATGAAGCAGTCAATGGCTGCCAGGACTCCAACACCCAAGCCAACCACAACTACAAGTACAACTGCAACCACAACTACAAGCACCAAAACTCCAACACCCAAGCCAACCACAACTACAAGCACAACTGCAACCACAACTACAAGCACCAAAACTTCAACACCCAAGCCAACCACAACTACAAGTACAACTGCAACCACAACTACAACCAACAATACTTCAGGACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135830 lncRNA upstream 26980 1350051 ~ 1397427 (+) True G108584
TU135825 lncRNA upstream 80652 1343552 ~ 1343755 (+) True G108580
TU135807 lncRNA upstream 125681 1298257 ~ 1298726 (+) False AMCG00006275
TU135793 lncRNA upstream 202983 1217879 ~ 1221424 (+) True G108555
TU135776 lncRNA upstream 222726 1201294 ~ 1201681 (+) True G108540
TU135850 lncRNA downstream 39506 1473372 ~ 1474967 (+) True G108595
TU135857 lncRNA downstream 53446 1487312 ~ 1487870 (+) True G108602
TU135860 lncRNA downstream 60498 1494364 ~ 1495708 (+) True G108605
TU135895 lncRNA downstream 203531 1637397 ~ 1814610 (+) True G108626
TU135905 lncRNA downstream 217189 1651055 ~ 1651459 (+) True G108632
AMCG00006282 mRNA upstream 9244 1360610 ~ 1415163 (+) True AMCG00006282
AMCG00006275 mRNA upstream 108849 1286829 ~ 1315558 (+) True AMCG00006275
AMCG00006276 mRNA upstream 140395 1278460 ~ 1284012 (+) False AMCG00006276
AMCG00006269 mRNA upstream 152399 1265532 ~ 1272008 (+) True AMCG00006269
AMCG00006270 mRNA upstream 211313 1199821 ~ 1213094 (+) True AMCG00006270
AMCG00006287 mRNA downstream 103041 1536907 ~ 1545850 (+) True AMCG00006287
AMCG00006286 mRNA downstream 139262 1573128 ~ 1574818 (+) True AMCG00006286
AMCG00006288 mRNA downstream 204193 1638059 ~ 1647130 (+) True AMCG00006288
AMCG00006289 mRNA downstream 226772 1660638 ~ 1661843 (+) True AMCG00006289
AMCG00006293 mRNA downstream 281617 1715483 ~ 1721110 (+) True AMCG00006293
TU135810 other upstream 138355 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 433585 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 575635 846561 ~ 848772 (+) False AMCG00006246
TU135436 other upstream 633345 774809 ~ 791062 (+) False G108319
TU135921 other downstream 302066 1735932 ~ 1739267 (+) True AMCG00006294
TU135896 other downstream 374691 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1927488 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 2069315 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 2136173 3570039 ~ 3573709 (+) False AMCG00006379

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_04019056_04035116.mRNA True 1524 mRNA 0.41 12 CI01000016 4019010 ~ 4035238 (+)