RNA id: AMCG00006283


Basic Information

Item Value
RNA id AMCG00006283
length 2122
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00006283
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1550443 ~ 1555554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTCTCTGGCTCACGCTGAGCAGCAGCAGTTCTGCTGGTTGCTGAAGGTGTGTCCCTGAAATGAGGtctcctctctttcctctcctcatctctctctcctgtctctctgaaTGGGCTCAGAGGTTGGGAGTGGAAGTCACTGCCAGTCCATCCGAGAATCTGAAGAGCGGAGACAGAATCACTCTGCGCTGTGGGCTGGACTGTGGGGGGGGCGCTGGAAGCTGCTCTGAGGCCCCACAGGGATTGACTCTGACCTGGAGGGACGAGAGTGGCGCCCCACTGAAGGACAGGCGAGACAGATACGAAATCAAGACCCTCGCAAATCGCAGTCACCTCTCAGTGAGTTTGCAGAGATCAGACCACTACAGACTCTGGGTCTGTGCGCTGGCAGAGGGAGGCAGGGTTGAGACCTGTGGAAACTATACCACAAAACTCTCAGACTTCATCCGGGAGGTGTACATCAGACTGGGAGATTTCCTACAGCTGCCCTGCCTGGAGTCTGTGCATCTGGGACCAGGAGAGATACTGCAGTGGCTCGTCAATAAAGCAGATACCATTAATTATGAGACCCTGTACACACTGTCAGAGGACGGACAGATCACTACAGCGATGGAGGTGAACCCTGAGAGGCTGGAGATGACAGTCAGCTCCTCACTGTTGATACGCAGTGTCCAGGCCCAGGACAGTGGCGTCTATTTGTGCTGCTTCAATGAGGAGACCCATGAGGTTTATTATCTGAACACAATATGGGTGAGTTCAGACCACACCGGGGAGGTAAAGAGGGGCTCCAACATCACCCTGACCTGCACCCTCACCTGTGGGCGGATTTATGGAAATATCAGCAACACACTTGTCTGGAGGGACAGTACAGGACACAGCCTGCAGGGGGGCACTACTGAGCAAATGAACAACAAGTTTATCTCCCGGCTGCTGGTCCCTGAGCTGCAGAGCTCTGAGAGGATCTGGTGCAGCGTGGTCAGAGAGGGGCTGGAGAGGGTGGAGCAGGACATTACCATTGTGGTAACAGATCCTCAGGGTTCAGCACTGTCATTAGTGGAGCTGGCGGTGAGACTCACTGTGTTCTTCATCGCTCTCTTTGTCCCTCTGGTCGCTGTAGCCGTGGTTTACACCaagaggaggagcagcagacagacagAGGAAGAAGAAACCAACATAGAACTGGTCTCCCGTGACTGATGTCCTGTCCACCCCTAACGACTCCCCGTCTCTCCCAGTGCTGAGAGAGAACAGTTCCTggacgtttttgtttttagttattgttcatttttgcattgtattattttccatcAATTATGCATTTGTCCCAATGGAACACAttccacattttaaatagtttttttcattgatttgtaattaaatgtgtacaGATATGTATAATTTTCATGAATTCCTGGTTATGAAACTGTGCTAGTCACTCCAGAAATATATGAATCTGTTAAATATCTCTTTAAGCCTACCtattcaccaccagaggtcatcttCACCTGAATACTAACCatgcaatcatccaattaacattccagcataccatgtgcacttgtcccAATAACCCTCTGCACTCATTGGTTCTACCTCTTCCCACCAGACTCCACTCTGCCCTGCATTTAAACCCCTAAGTCTTGTCTTATTCATTGAAGTATTTCTAAGCATTACCTCTGGTTATTTACTTTCCTGTGGGCCTTTGGATTGCCTGTTTGCCCTATCTATTGACCCCTCGACTGTCTTTGAACCTTGTCTCTCAGATATCCCTTTTGCATTGTTAGCCTTGCTTCCTCTGTTGGTGAGCTTGCCCTTGGGTTCACCTCTGGTGTCCTCAGGGACATAACCTTTCCACCCAGCTTTTGGGTTGAGATATACacctgtggaaggaaagttagaaattatactaatacctgtttttctctcttgtaatcttaagaaagataaggtcaggccagaaggtagtttgatctctgtttgttatttacgatgagaatgTTGGAggcaatgtcaaacagtatgattgaagtgcctgctccctaatccatatGTTGATCTGTGAACTCTGTATAATGAtgatattctgcttagctaactttTTAGATAACCtagtaatgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136091 lncRNA downstream 8082 1536944 ~ 1542361 (-) True G108772
TU136077 lncRNA downstream 140696 1405393 ~ 1409747 (-) True G108760
TU136073 lncRNA downstream 153112 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA downstream 190939 1359092 ~ 1359504 (-) False AMCG00006279
TU136067 lncRNA downstream 203602 1344516 ~ 1346841 (-) False AMCG00006292
TU136113 lncRNA upstream 106199 1661753 ~ 1663033 (-) True G108790
TU136114 lncRNA upstream 109394 1664948 ~ 1670631 (-) True G108791
TU136111 lncRNA upstream 164075 1719629 ~ 1721131 (-) True G108789
TU136135 lncRNA upstream 178641 1734195 ~ 1783566 (-) True G108805
TU136170 lncRNA upstream 330411 1885965 ~ 1886276 (-) True G108834
AMCG00006285 mRNA downstream 52389 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006284 mRNA downstream 56473 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006279 mRNA downstream 179029 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006277 mRNA downstream 208778 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 249800 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006291 mRNA upstream 40118 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006292 mRNA upstream 44583 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006290 mRNA upstream 122708 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006299 mRNA upstream 137689 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006298 mRNA upstream 167293 1722847 ~ 1723402 (-) False AMCG00006298
TU136076 other downstream 39903 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other downstream 75493 1473478 ~ 1474950 (-) False AMCG00006284
TU136068 other downstream 197502 1350485 ~ 1352941 (-) False G108755
TU136062 other downstream 208998 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 334259 1215225 ~ 1216184 (-) False AMCG00006274
TU136106 other upstream 90926 1646480 ~ 1660004 (-) True G108784
TU136131 other upstream 167007 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 325728 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 464447 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 542264 2097818 ~ 2130255 (-) False G108938

Expression Profile