RNA id: TU136085


Basic Information

Item Value
RNA id TU136085
length 1296
RNA type TUCP
GC content 0.48
exon number 2
gene id AMCG00006284
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1473478 ~ 1493970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGAGATCGCCGTGGAAATGGAGGCGGCAGTGCCAACGGTAACAACTGGCCCTCTCCCAAGAACAGGAAGTGAGCGCTCCAGAAGAGAAGCGTCCGCTCCCTGTCCTGAACCAACCAcgcttttaaaagaaacaagaacatGCATTCGTACGAGTGGAATTACCATAACTGAAGAACGATCGGAGTCCCAGCTCCCCGATCTCCACAAACCCTGCCCCCCCCGACCCCGCATATTAGCCCATCATTATACATCCTCATAGATACGGAGTTGTACACTCACTCttgctccctccctctttcctgGCCTTCatctatgtgtatatatacatatatacacacacacacacacacacacacacacacacacactcttcccAAAGGTACCTCCCTCTCTGCCCGTGTCcgttcacattttctttcctcctctgtctctctgtgcgttTCCTCTATCGGAGCCGGGGTTGTATAGCAGCAGCCTGTGAGAGAACACAAGTGCCAGAGAAGCGGCAAGCACAAAAGCCGAGGagcagagcagcagcaggaggccCGGGGCGGTCTGTGAAGTATTGAACTTCTCCGACGCTGAGGCACTGTGGGCGATGCTGGCTCCGCTCCTCCTGCTTTGTGATCACCATGGTGGAGGAATAGGCTCTAGGTCGGTCATTGTCGTACGACGGGAGGAATCTTCCGCGTCCGTTTCAGATGTACTTTGCGGTTTTTTGAACTCCAGAgtcagtgtggtgtgtgtgggtttttttttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAGGAATTGTTGCATTGCTTCTGCTCTcaacccagacagacagacgctcGCATACACACAGCCAGGGAAACGGGCTCGGAGAGGCGGTCGTGTGCGGGGACGGAGGGAGAGTAGAGAAAAATGCgggtttctgtttcagtgatGGTTTAGTTTCTGAATAAAGCggagtttcatttttaaatatccatggtgtgtactgacacacacacacacacacacttttgtttggGAATAAGTTGGCAAGGGATTTTCAGATTCAAAGCTTTCAGTTAGTCTTGGGCGCGGCTCAAGTTTCATTGAGTGTGCGTGTATGCGTGCGTTTTTAAAAGCTGCTCAGTTTCTGTGAAGTGCTGCAGACGGTATCTTTCTATGTATATCCACTATTTTTCTCTCACATGCAAACACCAACACacctgtgtatgtgtatttgtatgtgtgcacATGCATACAGACACACGTATGTATATAAGTCCCAGCTTACATTCCCCCcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136077 lncRNA downstream 63731 1405393 ~ 1409747 (-) True G108760
TU136073 lncRNA downstream 76147 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA downstream 113974 1359092 ~ 1359504 (-) False AMCG00006279
TU136067 lncRNA downstream 126637 1344516 ~ 1346841 (-) False AMCG00006292
TU136060 lncRNA downstream 141434 1328802 ~ 1332044 (-) True G108752
TU136089 lncRNA upstream 29248 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA upstream 61994 1536944 ~ 1542361 (-) True G108772
TU136113 lncRNA upstream 186803 1661753 ~ 1663033 (-) True G108790
TU136114 lncRNA upstream 189998 1664948 ~ 1670631 (-) True G108791
TU136111 lncRNA upstream 244679 1719629 ~ 1721131 (-) True G108789
AMCG00006279 mRNA downstream 102064 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006277 mRNA downstream 131813 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 172835 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 175508 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 211899 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006285 mRNA upstream 19410 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 75493 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006291 mRNA upstream 120722 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006292 mRNA upstream 125187 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006290 mRNA upstream 203312 1678262 ~ 1683356 (-) True AMCG00006290
TU136068 other downstream 120537 1350485 ~ 1352941 (-) False G108755
TU136062 other downstream 132033 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 257294 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 338788 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 733189 737260 ~ 740289 (-) False AMCG00006245
TU136106 other upstream 171530 1646480 ~ 1660004 (-) True G108784
TU136131 other upstream 247611 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 406332 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 545051 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 622868 2097818 ~ 2130255 (-) False G108938

Expression Profile