RNA id: TU136064


Basic Information

Item Value
RNA id TU136064
length 1641
RNA type TUCP
GC content 0.43
exon number 4
gene id AMCG00006292
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1344516 ~ 1637731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCACCTGTGGGTCTGGATGTGTTGAAGACACTGAACTGATCTGGAAGAACAGTACAGGACACAGCCTGCAGGGCAGCGCCAGCGAGTGCAACAAGAGCACCATCTGCTCCCAGCTGGTCCTTCAGCCCCAGAGCTCTGAGAGGATCCGGtgcagtgtggagagagaggggctggaGAGAGTGAGCCAGGACTGGACCATAAAGATAGAGGCTGGACCAGGGGGCAAGTTTCCGATGGTGGAGGTGGTATCTGCAGCTGCTGCCTTCTGTGTGCTTCTGCTCCTCGTCTTCATCATCTTTCtggtgatgaagatgaagaaaacgaagaaggagggaaaaaaggATAGAGTCCCTTCTGATCAAGCCGAGGAGAGGCCTGAGTCAGTTTATCACAGCCCTGAAGAAATCATGagcTGTGCTGCCCCTCCCCACACAGATGATGTCAACTATACCAGTGTAATGTTCAAGTCCAAGAAAAGGGGACCTGAGAGAGAACAGACCTTCCTCCCCAATAGTGACGATGTCATTTACTCTGCTGTCACAACCACCCAGTAGATTGGGGGAGTGCAATGAAATGAGCCAGCCAGCAGGGGTCACTGTGCTCCAGCTGCTACAGAGACACACTCCCGCTAGAGACCATCAGGGAGGATGCAATGACAGAAATACAAAGATGCactgaaagacacagagagtgagagagacgtGCACTTTTtttacaggcacacacacacatatacatgtacagctctggaaaaaattgagagaccacttaacattgatttctgaacttggagtggtctcttaattattcCAGAGCTACATTTATAGACAgagggagaaacagagagagaggaattgcttttatactttcttttttaatgctgcatatttaaaattatcttatattattataaacaggCTGGCCAGTTACAAAACttctgaaatatattgttttagtctgtgcactttaaaaacaaagtctATTTTTCCTCAGGTCATAATGAATATCCTATTTTGAGACTTGTTTTTCTAGGCATTAACAGCCATTGCTGAAGAAATGTAAATCAGATCTTGTACCCCAATACTGCTGTTTAAAAGCCTATATCTACAGTGCTGACCAGCAATGCAAAGCTGTGTTCTTCAGATCAGATCTTTTGGGGACAGAGGGCTTCTCATACCGATTCCACCTTCAGCTgataattagttaatttaaataattattcacaGAACTAAACCAATGGAAGGGAAACTCTCTGTTAGGTCCTCAATGTGGGTAATTACATTGTCTTAATTAGATaaacctgctggactggagCCCTCTGTGACTGGATTAGAATCACTACTGTGATGAAAACACTTCTTGGCTTCTAgaatctgaatttgaattgatgGAAAAACCTGTCTTCAGTCTGTTTTCtatgtttctattttctttaataaatctGTATTATATTGCACTTTGGACTAAATGTGTTCTTAAAGTTGTGTggagcatttttttaataacactaACCGCTCAATGTCCAGTGTCTGTATTAACTTGGGTATTATATGTTATTGTCACCTTTTCACAATAGAGAAATCGAAGAAACGCTTGAAAAGGTCTCTTGcagttggagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136060 lncRNA downstream 12472 1328802 ~ 1332044 (-) True G108752
TU136056 lncRNA downstream 23303 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 37636 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 131125 1211290 ~ 1213391 (-) False AMCG00006274
TU136017 lncRNA downstream 142835 1201296 ~ 1201681 (-) True G108717
TU136113 lncRNA upstream 38379 1661753 ~ 1663033 (-) True G108790
TU136114 lncRNA upstream 41574 1664948 ~ 1670631 (-) True G108791
TU136111 lncRNA upstream 96255 1719629 ~ 1721131 (-) True G108789
TU136135 lncRNA upstream 110821 1734195 ~ 1783566 (-) True G108805
TU136170 lncRNA upstream 262591 1885965 ~ 1886276 (-) True G108834
AMCG00006277 mRNA downstream 2851 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 43873 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 46546 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 82937 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 128361 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006290 mRNA upstream 54888 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006299 mRNA upstream 69869 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006298 mRNA upstream 99473 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006304 mRNA upstream 185282 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006305 mRNA upstream 243185 1866559 ~ 1870731 (-) True AMCG00006305
TU136062 other downstream 3071 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 128332 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 209826 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 604227 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 609106 731441 ~ 735410 (-) False AMCG00006245
TU136106 other upstream 23106 1646480 ~ 1660004 (-) True G108784
TU136131 other upstream 99187 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 257908 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 396627 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 474444 2097818 ~ 2130255 (-) False G108938

Expression Profile